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EPSRC Centre for Predictive Modelling in Healthcare

EPSRC Centre for Predictive Modelling in Healthcare

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| 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | Patents |

2021

Voliotis M, Li XF, De Burgh R, Lass G, Ivanova D, McIntyre C, O’Byrne KT, Tsaneva-Atanasova K. (2021) Modulation of pulsatile GnRH dynamics across the ovarian cycle: the role of glutamatergic transmission in the arcuate kisspeptin network, DOI:10.1101/2021.03.22.436428.
Voliotis M, Li XF, De Burgh RA, Lass G, Ivanova D, McIntyre C, O'Byrne K, Tsaneva-Atanasova K. (2021) Modulation of pulsatile GnRH dynamics across the ovarian cycle via changes in the network excitability and basal activity of the arcuate kisspeptin network, Elife, volume 10, DOI:10.7554/eLife.71252. [PDF]
Wuyts B, Sieber J. (2021) Generalised moment closure for discrete-state dynamics on networks. [PDF]
Fieldsend JE. (2021) Representation, Resolution, and Visualization in Multimodal Optimization, Metaheuristics for Finding Multiple Solutions, Springer, 27-55, DOI:10.1007/978-3-030-79553-5_2.
Alyahya K, Doherty K, Akman OE, Fieldsend JE. (2021) Reduced Models of Gene Regulatory Networks: Visualising Multi-modal Landscapes, Metaheuristics for Finding Multiple Solutions, Springer, 229-258, DOI:10.1007/978-3-030-79553-5_10.
Spencer APC, Brooks JCW, Masuda N, Byrne H, Lee-Kelland R, Jary S, Thoresen M, Goodfellow M, Cowan FM, Chakkarapani E. (2021) Motor function and white matter connectivity in children cooled for neonatal encephalopathy, Neuroimage Clin, volume 32, DOI:10.1016/j.nicl.2021.102872. [PDF]
Dankowicz H, Sieber J. (2021) Sensitivity Analysis for Periodic Orbits and Quasiperiodic Invariant Tori Using the Adjoint Method. [PDF]
Lux K, Ashwin P, Wood R, Kuehn C. (2021) Uniting Parametric Uncertainty and Tipping Diagrams. [PDF]
Preuss M, Epitropakis M, Li X, Fieldsend JE. (2021) Multimodal Optimization: Formulation, Heuristics, and a Decade of Advances, Metaheuristics for Finding Multiple Solutions, Springer, 1-26, DOI:10.1007/978-3-030-79553-5_1.
Preuss M, Epitropakis MG, Li X, Fieldsend JE. (2021) Metaheuristics for Finding Multiple Solutions, Springer.
Evans BD, Słowiński P, Hattersley AT, Jones SE, Sharp S, Kimmitt RA, Weedon MN, Oram RA, Tsaneva-Atanasova K, Thomas NJ. (2021) Estimating disease prevalence in large datasets using genetic risk scores, Nature Communications, volume 12, no. 1, article no. 6441, DOI:10.1038/s41467-021-26501-7.
Tait L, Lopes MA, Stothart G, Baker J, Kazanina N, Zhang J, Goodfellow M. (2021) A Large-Scale Brain Network Mechanism for Increased Seizure Propensity in Alzheimer’s Disease, DOI:10.1101/2021.01.19.427236.
Spencer APC, Brooks JCW, Masuda N, Byrne H, Lee-Kelland R, Jary S, Thoresen M, Goodfellow M, Cowan FM, Chakkarapani E. (2021) Motor Function and White Matter Connectivity in Children Treated with Therapeutic Hypothermia for Neonatal Encephalopathy, DOI:10.1101/2021.04.30.21256369.
Neto-Bradley AP, Choudhary R, Challenor P. (2021) A microsimulation of spatial inequality in energy access: A Bayesian multi-level modelling approach for urban India.
Ahsan Z, Dankowicz H, Li M, Sieber J. (2021) Methods of Continuation and their Implementation in the COCO Software Platform with Application to Delay Differential Equations.
Humphries AR, Krauskopf B, Ruschel S, Sieber J. (2021) Interplay between instantaneous and delayed feedback with delayed state dependence.
De Ath G, Everson R, Fieldsend J. (2021) How Bayesian Should Bayesian Optimisation Be?.
Ferrario A, Rankin J. (2021) Cascades of Periodic Solutions in a Neural Circuit With Delays and Slow-Fast Dynamics, Frontiers in Applied Mathematics and Statistics, volume 7, DOI:10.3389/fams.2021.716288.
Prince LY, Bacon T, Humphries R, Tsaneva-Atanasova K, Clopath C, Mellor JR. (2021) Separable actions of acetylcholine and noradrenaline on neuronal ensemble formation in hippocampal CA3 circuits, PLOS Computational Biology, volume 17, no. 10, pages e1009435-e1009435, DOI:10.1371/journal.pcbi.1009435.
Xu W. (2021) Generalising history matching for enhanced calibration of computer models.
Tait L, Lopes MA, Stothart G, Baker J, Kazanina N, Zhang J, Goodfellow M. (2021) A large-scale brain network mechanism for increased seizure propensity in Alzheimer’s disease, PLOS Computational Biology, volume 17, no. 8, pages e1009252-e1009252, DOI:10.1371/journal.pcbi.1009252.
Karatas MD, Akman OE, Fieldsend JE. (2021) Towards population-based fitness landscape analysis using local optima networks, GECCO Companion, pages 1674-1682. [PDF]
Ashwin P, Bick C, Poignard C. (2021) Dead zones and phase reduction of coupled oscillators, Chaos: An Interdisciplinary Journal of Nonlinear Science, volume 31, no. 9, pages 093132-093132, DOI:10.1063/5.0063423.
Gonzalez Herrero ME, Kuehn C, Tsaneva-Atanasova K. (2021) Reduced Models of Cardiomyocytes Excitability: Comparing Karma and FitzHugh–Nagumo, Bulletin of Mathematical Biology, volume 83, no. 8, pages 88-88, DOI:10.1007/s11538-021-00898-0. [PDF]
Narayana JK, Aogáin MM, Ali NABM, Tsaneva-Atanasova K, Chotirmall SH. (2021) Similarity network fusion (SNF) for the integration of multi-omics and microbiomes in respiratory disease, European Respiratory Journal, DOI:10.1183/13993003.01016-2021. [PDF]
Challen R, Tsaneva-Atanasova K, Pitt M, Edwards T, Gompels L, Lacasa L, Brooks-Pollock E, Danon L. (2021) Estimates of regional infectivity of COVID-19 in the United Kingdom following imposition of social distancing measures, Philosophical Transactions of the Royal Society B: Biological Sciences, volume 376, pages 20200280-20200280, article no. 1829, DOI:10.1098/rstb.2020.0280. [PDF]
Prudden R, Robinson N, Challenor P, Everson R. (2021) Stochastic Downscaling to Chaotic Weather Regimes using Spatially Conditioned Gaussian Random Fields with Adaptive Covariance. [PDF]
Zerenner T, Goodfellow M, Ashwin P. (2021) Harmonic cross-correlation decomposition for multivariate time series, Physical Review E: Statistical, Nonlinear, and Soft Matter Physics, DOI:10.1103/PhysRevE.103.062213.
Mohammadi H, Challenor P, Goodfellow M. (2021) Emulating computationally expensive dynamical simulators using Gaussian processes. [PDF]
Zhang Z, Páez Chávez J, Sieber J, Liu Y. (2021) Controlling grazing-induced multistability in a piecewise-smooth impacting system via the time-delayed feedback control, Nonlinear Dynamics, DOI:10.1007/s11071-021-06511-2.
Abadi RV, Akman OE, Arblaster GE, Clement RA. (2021) Analysing nystagmus waveforms: a computational framework, Scientific Reports, volume 11, no. 1, article no. 9761, DOI:10.1038/s41598-021-89094-7.
Ferrario A, Rankin J. (2021) Auditory streaming emerges from fast excitation and slow delayed inhibition, The Journal of Mathematical Neuroscience, volume 11, no. 1, article no. 8, DOI:10.1186/s13408-021-00106-2.
De Ath G, Everson R, Fieldsend J. (2021) How Bayesian Should Bayesian Optimisation Be?, Genetic and Evolutionary Computation Conference Companion, Lille, France, 10th - 14th Jul 2021, DOI:10.1145/3449726.3463164.
Ashwin P, Newman J. (2021) Physical invariant measures and tipping probabilities for chaotic attractors of asymptotically autonomous systems, European Physical Journal: Special Topics, DOI:10.1140/epjs/s11734-021-00114-z. [PDF]
Mac Aogáin M, Narayana JK, Tiew PY, Ali NABM, Yong VFL, Jaggi TK, Lim AYH, Keir HR, Dicker AJ, Thng KX. (2021) Integrative microbiomics in bronchiectasis exacerbations, Nature Medicine, volume 27, no. 4, pages 688-699, DOI:10.1038/s41591-021-01289-7. [PDF]
Volodina V, Challenor P. (2021) The importance of uncertainty quantification in model reproducibility, Philos Trans A Math Phys Eng Sci, volume 379, no. 2197, DOI:10.1098/rsta.2020.0071. [PDF]
Winter MJ, Pinion J, Tochwin A, Takesono A, Ball JS, Grabowski P, Metz J, Trznadel M, Tse K, Redfern WS. (2021) Functional brain imaging in larval zebrafish for characterising the effects of seizurogenic compounds acting via a range of pharmacological mechanisms, Br J Pharmacol, volume 178, no. 13, pages 2671-2689, DOI:10.1111/bph.15458. [PDF]
Wedgwood K, Slowinski P, Manson J, Tsaneva-Atanasova K, Krauskopf B. (2021) Robust spike timing in an excitable cell with delayed feedback, Journal of the Royal Society Interface, volume 18, DOI:10.1098/rsif.2021.0029. [PDF]
McArdle CA, Voliotis M, Tsaneva-Atanasova K, Fowkes RC. (2021) Chapter 7 - Gonadotropin-Releasing Hormone Receptors and Signaling, Cellular Endocrinology in Health and Disease (Second Edition), Academic Press, 149-181, DOI:10.1016/B978-0-12-819801-8.00007-7. [PDF]
Xu W, Williamson DB, Challenor P. (2021) LOCAL VORONOI TESSELLATIONS FOR ROBUST MULTIWAVE CALIBRATION OF COMPUTER MODELS, International Journal for Uncertainty Quantification, volume 11, no. 5, pages 1-17, DOI:10.1615/int.j.uncertaintyquantification.2021034779.
Challen R, Brooks-Pollock E, Read JM, Dyson L, Tsaneva-Atanasova K, Danon L. (2021) Risk of mortality in patients infected with SARS-CoV-2 variant of concern 202012/1: matched cohort study, BMJ, volume 372, pages n579-n579, DOI:10.1136/bmj.n579. [PDF]
Daniels SJ, Rahat AAM, Tabor GR, Fieldsend JE, Everson RM. (2021) Application of multi-objective Bayesian shape optimisation to a sharp-heeled Kaplan draft tube, Optimization and Engineering, DOI:10.1007/s11081-021-09602-6.
Qin S, Sun C, Jin Y, Tan Y, Fieldsend J. (2021) Large-scale Evolutionary Multi-objective Optimization Assisted by Directed Sampling, IEEE Transactions on Evolutionary Computation, pages 1-15, DOI:10.1109/tevc.2021.3063606.
Arthur T, Harris D, Allen K, Naylor C, Wood G, Vine S, Wilson M, Tsaneva-Atanasova K, Buckingham G. (2021) Visuo-motor attention during object interaction in children with developmental coordination disorder, Cortex, DOI:10.1016/j.cortex.2021.02.013. [PDF]
Spencer APC, Brooks JCW, Masuda N, Byrne H, Lee-Kelland R, Jary S, Thoresen M, Tonks J, Goodfellow M, Cowan FM. (2021) Disrupted brain connectivity in children treated with therapeutic hypothermia for neonatal encephalopathy, NeuroImage: Clinical, volume 30, DOI:10.1016/j.nicl.2021.102582.
Lin C, Ashwin P, Steinberg G. (2021) Modelling the motion of organelles in an elongated cell via the coordination of heterogeneous drift–diffusion and long-range transport, The European Physical Journal E, volume 44, no. 2, article no. 10, DOI:10.1140/epje/s10189-020-00007-4.
Ivascu C, Fieldsend J, Everson R. (2021) Optimising diversity in classifier ensembles of classification trees, Applications of Evolutionary Computation. EvoApplications 2021, Seville, Spain, 7th - 9th Apr 2021, Lecture Notes in Computer Science, volume 12694, pages 634-648, DOI:10.1007/978-3-030-72699-7_40.
Kimpton L. (2021) Uncertainty Quantification for Numerical Models with Two Regions of Solution.
Liu H, Prashant NM, Spurr LF, Bousounis P, Alomran N, Ibeawuchi H, Sein J, Słowiński P, Tsaneva-Atanasova K, Horvath A. (2021) scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets, BMC Genomics, volume 22, no. 1, pages 40-40, DOI:10.1186/s12864-020-07334-y. [PDF]
Smith LIF, Zhao Z, Walker J, Lightman S, Spiga F. (2021) Activation and expression of endogenous CREB-regulated transcription coactivators (CRTC) 1, 2 and 3 in the rat adrenal gland, Journal of Neuroendocrinology, volume 33, no. 1, DOI:10.1111/jne.12920.
Ashwin P, Postlethwaite C. (2021) Excitable networks for finite state computation with continuous time recurrent neural networks, Biological Cybernetics, volume 115, no. 5, pages 519-538, DOI:10.1007/s00422-021-00895-5.
von der Heydt AS, Ashwin P, Camp CD, Crucifix M, Dijkstra HA, Ditlevsen P, Lenton TM. (2021) Quantification and interpretation of the climate variability record, Global and Planetary Change, volume 197, DOI:10.1016/j.gloplacha.2020.103399.
Krauskopf B, Sieber J. (2021) Bifurcation Analysis of Systems with Delays: Methods and Their Use in Applications, Controlling delayed dynamics: advances in theory, methods and applications, Springer. [PDF]
Coste A, Bardy BG, Janaqi S, Słowiński P, Tsaneva-Atanasova K, Goupil JL, Marin L. (2021) Correction to: Decoding identity from motion: how motor similarities colour our perception of self and others, Psychol Res, volume 85, no. 2, DOI:10.1007/s00426-020-01361-w. [PDF]
Coste A, Bardy BG, Janaqi S, Słowiński P, Tsaneva-Atanasova K, Goupil JL, Marin L. (2021) Decoding identity from motion: how motor similarities colour our perception of self and others, Psychol Res, volume 85, no. 2, pages 509-519, DOI:10.1007/s00426-020-01290-8. [PDF]
Creaser J, Ashwin P, Postlethwaite C, Britz J. (2021) Noisy network attractor models for transitions between EEG microstates, The Journal of Mathematical Neuroscience, volume 11, no. 1, article no. 1, DOI:10.1186/s13408-020-00100-0.

2020

Spencer APC, Brooks JCW, Masuda N, Byrne H, Lee-Kelland R, Jary S, Thoresen M, Tonks J, Goodfellow M, Cowan FM. (2020) Structural Connectivity in Children Treated with Therapeutic Hypothermia for Neonatal Encephalopathy, DOI:10.1101/2020.09.23.20200014.
Baker E, Challenor P, Eames M. (2020) Future Proofing a Building Design Using History Matching Inspired Level-Set Techniques.
Kimpton L, Challenor P, Williamson D. (2020) Classification of Computer Models with Labelled Outputs.
Falkena SKJ, Quinn C, Sieber J, Dijkstra HA. (2020) A Delay Equation Model for the Atlantic Multidecadal Oscillation.
De Ath G, Everson RM, Fieldsend JE, Rahat AAM. (2020) $\epsilon$-shotgun: $\epsilon$-greedy Batch Bayesian Optimisation.
De Ath G, Fieldsend JE, Everson RM. (2020) What do you Mean? The Role of the Mean Function in Bayesian Optimisation.
De Ath G, Everson RM, Fieldsend JE. (2020) Asynchronous \epsilon-Greedy Bayesian Optimisation.
Mohammadi H, Challenor P, Williamson D, Goodfellow M. (2020) Cross-validation based adaptive sampling for Gaussian process models. [PDF]
Ath GD, Everson RM, Fieldsend JE. (2020) Asynchronous ε-Greedy Bayesian Optimisation. [PDF]
Wang H, Sun C, Zhang G, Fieldsend JE, Jin Y. (2020) Non-dominated Sorting on Performance Indicators for Evolutionary Many-objective Optimization, Information Sciences, DOI:10.1016/j.ins.2020.11.008.
Abbara A, Eng PC, Phylactou M, Clarke SA, Richardson R, Sykes CM, Phumsatitpong C, Mills E, Modi M, Izzi-Engbeaya C. (2020) Kisspeptin receptor agonist has therapeutic potential for female reproductive disorders, J Clin Invest, volume 130, no. 12, DOI:10.1172/JCI139681. [PDF]
Zavala E, Voliotis M, Zerenner T, Tabak J, Walker JJ, Li XF, Terry JR, Lightman SL, O’Byrne K, Tsaneva-Atanasova K. (2020) Dynamic Hormone Control of Stress and Fertility, Frontiers in Physiology, volume 11, pages 1457-1457, DOI:10.3389/fphys.2020.598845. [PDF]
Tait L, Tamagnini F, Stothart G, Barvas E, Monaldini C, Frusciante R, Volpini M, Guttmann S, Coulthard E, Brown JT. (2020) EEG microstate complexity for aiding early diagnosis of Alzheimer’s disease, Scientific Reports, volume 10, no. 1, article no. 17627, DOI:10.1038/s41598-020-74790-7.
Parakkal Unni M, Menon PP, Livi L, Wilson MR, Young WR, Bronte-Stewart HM, Tsaneva-Atanasova K. (2020) Data-Driven Prediction of Freezing of Gait Events From Stepping Data, Frontiers in Medical Technology, volume 2, pages 581264-581264, DOI:10.3389/fmedt.2020.581264. [PDF]
Avramidis E, Lalik M, Akman OE. (2020) SODECL, ACM Transactions on Mathematical Software, volume 46, no. 3, pages 1-21, DOI:10.1145/3385076.
Parakkal Unni M, Menon PP, Wilson MR, Tsaneva-Atanasova K. (2020) Ankle Push-off Based Mathematical Model for Freezing of Gait in Parkinson’s Disease, Frontiers in Bioengineering and Biotechnology, volume 8, pages 1197-1197, DOI:10.3389/fbioe.2020.552635.
Creaser J, Ashwin P, Tsaneva-Atanasova K. (2020) Sequential escapes and synchrony breaking for networks of bistable oscillatory nodes, SIAM Journal on Applied Dynamical Systems, volume 19, no. 4, pages 2829-2846, DOI:10.1137/20M1345773.
Clement RA, Akman OE. (2020) Slow-fast control of eye movements: an instance of Zeeman's model for an action, Biol Cybern, volume 114, no. 4-5, pages 519-532, DOI:10.1007/s00422-020-00845-7. [PDF]
Creaser J, Lin C, Ridler T, Brown JT, D'Souza W, Seneviratne U, Cook M, Terry JR, Tsaneva-Atanasova K. (2020) Domino-like transient dynamics at seizure onset in epilepsy, PLoS Computational Biology, volume 16, no. 9, DOI:10.1371/journal.pcbi.1008206.
Słowiński P, Li M, Restrepo P, Alomran N, Spurr LF, Miller C, Tsaneva-Atanasova K, Horvath A. (2020) GeTallele: A Method for Analysis of DNA and RNA Allele Frequency Distributions, Frontiers in Bioengineering and Biotechnology, volume 8, pages 1021-1021, DOI:10.3389/fbioe.2020.01021. [PDF]
Lambert FH, Challenor PG, Lewis NT, McNeall DJ, Owen N, Boutle IA, Christensen HM, Keane RJ, Mayne NJ, Stirling A. (2020) Continuous Structural Parameterization: A Proposed Method for Representing Different Model Parameterizations Within One Structure Demonstrated for Atmospheric Convection, Journal of Advances in Modeling Earth Systems, volume 12, no. 8, DOI:10.1029/2020ms002085.
Ath GD, Everson RM, Fieldsend JE, Rahat AA-AM. (2020) ϵ-shotgun: ϵ-greedy batch bayesian optimisation, GECCO, pages 787-795. [PDF]
Pope RJP, Garner KL, Voliotis M, Lay AC, Betin VMS, Tsaneva-Atanasova K, Welsh GI, Coward RJM, McArdle CA. (2020) An information theoretic approach to insulin sensing by human kidney podocytes, Molecular and Cellular Endocrinology, pages 110976-110976, DOI:10.1016/j.mce.2020.110976. [PDF]
Voliotis M, Rosko J, Pilizota T, Liverpool T. (2020) Steady state running rate sets the speed and accuracy of accumulation of swimming bacterial populations. [PDF]
Alkhayuon H, Ashwin P. (2020) Weak tracking in nonautonomous chaotic systems, Physical Review E, volume 102, no. 5, article no. 052210, DOI:10.1103/physreve.102.052210.
Ath GD, Fieldsend JE, Everson RM. (2020) What do you mean?: the role of the mean function in bayesian optimisation, GECCO Companion, pages 1623-1631. [PDF]
Daniels SJ, Rahat AAM, Tabor GR, Fieldsend JE, Everson RM. (2020) Shape optimisation of the sharp-heeled Kaplan draft tube: Performance evaluation using Computational Fluid Dynamics, Renewable Energy, volume 160, pages 112-126, DOI:10.1016/j.renene.2020.05.164.
Thompson RN, Hollingsworth TD, Isham V, Arribas-Bel D, Ashby B, Britton T, Challoner P, Chappell LHK, Clapham H, Cunniffe NJ. (2020) Key Questions for Modelling COVID-19 Exit Strategies, Proc. Roy. Soc. B, 2020. [PDF]
Darki F, Rankin J. (2020) Methods to assess binocular rivalry with periodic stimuli, Journal of Mathematical Neuroscience, volume 10, no. 1, DOI:10.1186/s13408-020-00087-8.
Voliotis M. (2020) Single-cell microfluidics facilitates the rapid quantification of antibiotic accumulation in Gram-negative bacteria. (Model & Matlab Code).
Cama J, Voliotis M, Metz J, Smith A, Iannucci J, Keyser UF, Tsaneva K, Pagliara S. (2020) Single-cell microfluidics facilitates the rapid quantification of antibiotic accumulation in Gram-negative bacteria, Lab on a Chip, DOI:10.1039/D0LC00242A.
Akman OE, Fieldsend JE. (2020) Multi-objective optimisation of gene regulatory networks: Insights from a Boolean circadian clock model, EPiC Series in Computing, volume 70, pages 149-162, DOI:10.29007/bvbj.
McNeall D, Williams J, Betts R, Booth B, Challenor P, Good P, Wiltshire A. (2020) Correcting a bias in a climate model with an augmented emulator, Geoscientific Model Development, volume 13, no. 5, pages 2487-2509, DOI:10.5194/gmd-13-2487-2020.
Whitfield CJ, Banks AM, Dura G, Love J, Fieldsend JE, Goodchild SA, Fulton DA, Howard TP. (2020) Cell-free protein synthesis in hydrogel materials, Chem Commun (Camb), volume 56, no. 52, pages 7108-7111, DOI:10.1039/d0cc02582h. [PDF]
Campos P, Walker JJ, Mollard P. (2020) Diving into the brain: deep-brain imaging techniques in conscious animals, J Endocrinol, volume 246, no. 2, pages R33-R50, DOI:10.1530/JOE-20-0028. [PDF]
Biktashev VN, Melbourne I. (2020) St. Petersburg paradox for quasiperiodically hypermeandering spiral waves. [PDF]
Mac Aogáin M, Lau KJX, Cai Z, Narayana JK, Purbojati RW, Drautz-Moses DI, Gaultier NE, Jaggi TK, Tiew PY, Ong TH. (2020) Metagenomics Reveals a Core Macrolide Resistome Related to Microbiota in Chronic Respiratory Disease, American Journal of Respiratory and Critical Care Medicine, pages rccm.201911-2202OC, DOI:10.1164/rccm.201911-2202OC. [PDF]
Fieldsend J. (2020) Data Structures for Non-Dominated Sets: Implementations and Empirical Assessment of Two Decades of Advances, Genetic and Evolutionary Computation Conference (GECCO ’20), Cancún, Mexico, 8th - 12th Jul 2020, DOI:10.1145/3377930.3390150.
Ath GD, Fieldsend JE, Everson RM. (2020) What do you Mean? The Role of the Mean Function in Bayesian Optimisation. [PDF]
Zaveri HP, Schelter B, Schevon CA, Jiruska P, Jefferys JGR, Worrell G, Schulze-Bonhage A, Joshi RB, Jirsa V, Goodfellow M. (2020) Controversies on the network theory of epilepsy: Debates held during the ICTALS 2019 conference, Seizure, volume 78, pages 78-85, DOI:10.1016/j.seizure.2020.03.010. [PDF]
Richards DM, Walker JJ, Tabak J. (2020) Ion channel noise shapes the electrical activity of endocrine cells, PLoS Comput Biol, volume 16, no. 4, DOI:10.1371/journal.pcbi.1007769. [PDF]
Foo M, Bates DG, Akman OE. (2020) A simplified modelling framework facilitates more complex representations of plant circadian clocks, PLoS Comput Biol, volume 16, no. 3, DOI:10.1371/journal.pcbi.1007671. [PDF]
Tiew PY, Ko FWS, Narayana JK, Poh ME, Xu H, Neo HY, Loh L-C, Ong C-K, Aogáin MM, Tan JHY. (2020) ‘HIGH RISK’ CLINICAL AND INFLAMMATORY CLUSTERS IN COPD OF CHINESE DESCENT, Chest, DOI:10.1016/j.chest.2020.01.043. [PDF]
Ahsan Z, Dankowicz H, Sieber J. (2020) Correction to: Optimization along families of periodic and quasiperiodic orbits in dynamical systems with delay (Nonlinear Dynamics, (2020), 99, 1, (837-854), 10.1007/s11071-019-05304-y), Nonlinear Dynamics, volume 100, no. 1, DOI:10.1007/s11071-020-05525-6.
Cooper FC, Dueben PD, Denis C, Dawson A, Ashwin P. (2020) The Relationship between Numerical Precision and Forecast Lead Time in the Lorenz'95 System, MONTHLY WEATHER REVIEW, volume 148, no. 2, pages 849-855, DOI:10.1175/MWR-D-18-0200.1. [PDF]
Zhang Z, Liu Y, Sieber J. (2020) Calculating the Lyapunov exponents of a piecewise-smooth soft impacting system with a time-delayed feedback controller. [PDF]
Lopes MA, Junges L, Woldman W, Goodfellow M, Terry JR. (2020) The Role of Excitability and Network Structure in the Emergence of Focal and Generalized Seizures, Frontiers in Neurology, volume 11, pages 74-74, DOI:10.3389/fneur.2020.00074. [PDF]
White RR, Lin C, Leaves I, Castro IG, Metz J, Bateman BC, Botchway SW, Ward AD, Ashwin P, Sparkes I. (2020) Miro2 tethers the ER to mitochondria to promote mitochondrial fusion in tobacco leaf epidermal cells, Commun Biol, volume 3, no. 1, DOI:10.1038/s42003-020-0872-x. [PDF]
Kimpton L, Challenor P, Williamson D. (2020) Classification of Computer Models with Labelled Outputs. [PDF]
Ath GD, Everson RM, Fieldsend JE, Rahat AAM. (2020) $ε$-shotgun: $ε$-greedy Batch Bayesian Optimisation. [PDF]
Challen R, Tsaneva-Atanasova K, Edwards T, Gompels L, Dayer M, Pitt M, Danon L. (2020) Factors influencing digital review of pathology test results in an inpatient setting: a cross-sectional study, JAMIA Open, DOI:10.1093/jamiaopen/ooaa003. [PDF]
Ceni A, Ashwin P, Livi L, Postlethwaite C. (2020) The echo index and multistability in input-driven recurrent neural networks, Physica D: Nonlinear Phenomena, volume 412, DOI:10.1016/j.physd.2020.132609.
Baker E, Challenor P, Eames M. (2020) Future Proofing a Building Design Using History Matching Inspired Level-Set Techniques. [PDF]
S\lowiński P, Al-Ramadhani S, Tsaneva-Atanasova K. (2020) Neurologically Motivated Coupling Functions in Models of Motor Coordination, SIAM Journal on Applied Dynamical Systems, volume 19, pages 208-232, article no. 1, DOI:10.1137/19M1279381. [PDF]
Ahsan Z, Dankowicz H, Sieber J. (2020) Correction to: Optimization along families of periodic and quasiperiodic orbits in dynamical systems with delay (Nonlinear Dynamics, (2020), 99, 1, (837-854), 10.1007/s11071-019-05304-y), Nonlinear Dynamics, volume 99, no. 3, DOI:10.1007/s11071-019-05417-4.
Spurr LF, Alomran N, Bousounis P, Reece-Stremtan D, Prashant NM, Liu H, Słowiński P, Li M, Zhang Q, Sein J. (2020) ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data, Bioinformatics, volume 36, no. 5, pages 1351-1359, DOI:10.1093/bioinformatics/btz750. [PDF]
Baldemir H, Avitabile D, Tsaneva-Atanasova K. (2020) Pseudo-plateau bursting and mixed-mode oscillations in a model of developing inner hair cells, Communications in Nonlinear Science and Numerical Simulation, volume 80, pages 104979-104979, DOI:10.1016/j.cnsns.2019.104979. [PDF]
Nyman KHM, Ashwin P, Ditlevsen PD. (2020) Bifurcation of critical sets and relaxation oscillations in singular fast-slow systems, Nonlinearity, volume 33, no. 6, pages 2853-2904, DOI:10.1088/1361-6544/ab7292.
Baker E, Challenor P, Eames M. (2020) Predicting the Output From a Stochastic Computer Model When a Deterministic Approximation is Available, Journal of Computational and Graphical Statistics, volume 29, no. 4, pages 786-797, DOI:10.1080/10618600.2020.1750416.
Ashwin P, Castro SBSD, Lohse A. (2020) Almost Complete and Equable Heteroclinic Networks, Journal of Nonlinear Science, volume 30, no. 1, DOI:10.1007/s00332-019-09566-z.
Ashwin P, Goetz A, Peres P, Rodrigues A. (2020) Embeddings of interval exchange transformations into planar piecewise isometries, Ergodic Theory and Dynamical Systems, volume 40, no. 5, pages 1153-1179, DOI:10.1017/etds.2018.112.

2019

Dhillo W, Prague J, Voliotis M, Clarke S, Comninos A, Abbara A, Jayasena C, Roberts R, Yang L, Veldhuis J. (2019) OR11-4 Determining the Relationship between Hot Flushes and LH Pulses in Menopausal Women Using Mathematical Modelling, Journal of the Endocrine Society, volume 3, no. Suppl 1, pages or11-or14, DOI:10.1210/js.2019-or11-4.
Creaser J, Ashwin P, Postlethwaite C, Britz J. (2019) Noisy network attractor models for transitions between EEG microstates.
Bick C, Goodfellow M, Laing CR, Martens EA. (2019) Understanding the dynamics of biological and neural oscillator networks through exact mean-field reductions: a review.
Kimpton L, Challenor P, Williamson D. (2019) Modelling Numerical Systems with Two Distinct Labelled Output Classes.
Baker E, Challenor P, Eames M. (2019) Predicting the Output From a Stochastic Computer Model When a Deterministic Approximation is Available.
Baker E, Challenor P, Eames M. (2019) Diagnostics for Stochastic Gaussian Process Emulators.
Yanchuk S, Ruschel S, Sieber J, Wolfrum M. (2019) Temporal dissipative solitons in time-delay feedback systems.
Falkena SKJ, Quinn C, Sieber J, Frank J, Dijkstra HA. (2019) Derivation of Delay Equation Climate Models Using the Mori-Zwanzig Formalism.
Ahsan Z, Dankowicz H, Sieber J. (2019) Optimization along Families of Periodic and Quasiperiodic Orbits in Dynamical Systems with Delay.
Renson L, Sieber J, Barton DAW, Shaw AD, Neild SA. (2019) Numerical Continuation in Nonlinear Experiments using Local Gaussian Process Regression.
Laiou P, Avramidis E, Lopes MA, Abela E, Müller M, Akman OE, Richardson MP, Rummel C, Schindler K, Goodfellow M. (2019) Quantification and selection of ictogenic zones in epilepsy surgery, DOI:10.1101/602490.
Avramidis E, Lalik M, Akman OE. (2019) SODECL: An Open Source Library for Calculating Multiple Orbits of a System of Stochastic Differential Equations in Parallel.
Sanders ND, Everson RM, Fieldsend JE, Rahat AAM. (2019) A Bayesian Approach for the Robust Optimisation of Expensive-To-Evaluate Functions.
De Ath G, Everson RM, Rahat AAM, Fieldsend JE. (2019) Greed is Good: Exploration and Exploitation Trade-offs in Bayesian Optimisation.
Whitfield CJ, Banks AM, Dura G, Love J, Fieldsend JE, Goodchild SA, Fulton DA, Howard TP. (2019) Cell-free genetic devices confer autonomic and adaptive properties to hydrogels, DOI:10.1101/2019.12.12.872622.
Daniels S, Rahat A, Tabor G, Fieldsend J, Everson R. (2019) A Review of Shape Distortion Methods Available in the OpenFOAM (R) Framework for Automated Design Optimisation, OPENFOAM(R), pages 389-399, DOI:10.1007/978-3-319-60846-4_28. [PDF]
Dhillo W, Liang S, Kinghorn A, Voliotis M, Prague J, Veldhuis J, Tsaneva-Atanasova K, McArdle C, Li HWR, Cass T. (2019) SAT-LB040 Measuring LH Pulsatility in Patients with Reproductive Disorders Using a Novel Robotic Aptamer-Enabled Electrochemical Reader (RAPTER), Journal of the Endocrine Society, volume 3, no. Supplement_1, DOI:10.1210/js.2019-sat-lb040.
Tait L, Tamagnini F, Stothart G, Barvas E, Monaldini C, Frusciante R, Volpini M, Guttmann S, Coulthard E, Brown JT. (2019) EEG microstate complexity for aiding early diagnosis of Alzheimer’s disease, bioRxiv, pages 833244-833244, DOI:10.1101/833244. [PDF]
Hill YR, Fieldsend JE, Terry JR. (2019) Reconstructing electrocardiograms from computational models of infarcted ventricles to determine the location of myocardial infarct scars based on features of the signal, EUROPEAN HEART JOURNAL, volume 40, pages 1405-1405. [PDF]
Mac Aogain M, Kumar JN, Lim AYH, Low TB, Ong TH, Chew FT, Oliver B, Keir HR, Koh MS, Abisheganaden JA. (2019) "Integrative Microbiomics" Through Similarity Network Fusion Identifies Clinically Relevant Bronchiectasis Phenotypes, AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, volume 199. [PDF]
Hill YR, Fieldsend JE, Terry JR. (2019) P2439Reconstructing electrocardiograms from computational models of infarcted ventricles to determine the location of myocardial infarct scars based on features of the signal, European Heart Journal, volume 40, no. Supplement_1, DOI:10.1093/eurheartj/ehz748.0771.
Ath GD, Everson RM, Rahat AAM, Fieldsend JE. (2019) Greed is Good: Exploration and Exploitation Trade-offs in Bayesian Optimisation. [PDF]
Marcotte CD, Biktashev VN. (2019) Predicting critical ignition in slow-fast excitable models, Phys. Rev. E, volume 101. [PDF]
Daniels SJ, Rahat AAM, Tabor GR, Fieldsend JE, Everson RM. (2019) Automated shape optimisation of a plane asymmetric diffuser using combined Computational Fluid Dynamic simulations and multi-objective Bayesian methodology, International Journal of Computational Fluid Dynamics, volume 33, no. 6-7, pages 256-271, DOI:10.1080/10618562.2019.1683165.
Sieber J, Hutchinson JW, Thompson JMT. (2019) Buckling Thresholds for Pre-loaded Spherical Shells Subject to Localized Blasts, Journal of Applied Mechanics, article no. JAM-19-1539, DOI:10.1115/1.4045588.
Felemban L. (2019) Coupled Oscillators for Orientation Dynamics.
Rankin J, Rinzel J. (2019) Computational Models of Auditory Stream Segregation, Encyclopedia of Computational Neuroscience, Springer New York, 1-6, DOI:10.1007/978-1-4614-7320-6_100685-1.
Felemban L. (2019) Coupled Oscillators for orientation dynamics.
Laiou P, Avramidis E, Lopes MA, Abela E, Müller M, Akman OE, Richardson MP, Rummel C, Schindler K, Goodfellow M. (2019) Quantification and Selection of Ictogenic Zones in Epilepsy Surgery, Frontiers in Neurology, volume 10, DOI:10.3389/fneur.2019.01045.
Smith P, Buhl E, Tsaneva-Atanasova K, Hodge JJL. (2019) Shaw and Shal voltage-gated potassium channels mediate circadian changes in Drosophila clock neuron excitability, The Journal of Physiology, DOI:10.1113/JP278826. [PDF]
Voliotis M, Feng Li X, De Burgh R, Lass G, Lightman SL, O’Byrne KT, Tsaneva-Atanasova K. (2019) The origin of GnRH pulse generation: An integrative mathematical-experimental approach, Journal of Neuroscience, DOI:10.1523/JNEUROSCI.0828-19.2019. [PDF]
Galvis D, Walsh D, Harries LW, Latorre E, Rankin J. (2019) A dynamical systems model for the measurement of cellular senescence, Journal of the Royal Society Interface, volume 16, article no. 159, DOI:10.1098/rsif.2019.0311.
Byrne Á, Rinzel J, Rankin J. (2019) Auditory streaming and bistability paradigm extended to a dynamic environment, Hearing Research, volume 383, DOI:10.1016/j.heares.2019.107807.
Alsuwaylimi A, Fieldsend J. (2019) A New Initialisation Method for Examination Timetabling Heuristics, IEEE Symposium Series on Computational Intelligence, Xiamen, China, 6th - 9th Dec 2019, Proceedings of the IEEE Symposium Series on Computational Intelligence.
Buckingham G, Allen K, Vine SJ, Harris DJ, Wood G, Tsaneva-Atanasova K, Wilson MR. (2019) Investigating How Prior Knowledge Influences Perception and Action in Developmental Coordination Disorder, PERCEPTION, volume 48, pages 75-76. [PDF]
Almutairi A, Fieldsend J. (2019) Automated and Surrogate Multi-Resolution Approaches in Genetic Algorithms, 2019 IEEE Symposium Series on Computational Intelligence, Xiamen, China, 6th - 9th Dec 2019.
Tait L. (2019) Multi-Scale Mathematical Modelling of Brain Networks in Alzheimer's Disease.
Dhillo W, Liang S, Kinghorn A, Voliotis M, Prague J, Veldhuis J, Tsaneva-Atanasova K, McArdle C, Li R, Cass A. (2019) Measuring LH Pulsatility in Patients with Reproductive Disorders Using a Novel Robotic Aptamer-Enabled Electrochemical Reader (RAPTER), HUMAN REPRODUCTION, volume 34, pages 125-126. [PDF]
Rankin J, Rinzel J. (2019) Computational models of auditory perception from feature extraction to stream segregation and behavior, Curr Opin Neurobiol, volume 58, pages 46-53, DOI:10.1016/j.conb.2019.06.009. [PDF]
Tokmakian R, Challenor P. (2019) Near surface ocean temperature uncertainty related to initial condition uncertainty, Climate Dynamics, volume 53, no. 7-8, pages 4683-4700, DOI:10.1007/s00382-019-04872-4.
Lopes MA, Perani S, Yaakub SN, Richardson MP, Goodfellow M, Terry JR. (2019) Revealing epilepsy type using a computational analysis of interictal EEG, Sci Rep, volume 9, no. 1, DOI:10.1038/s41598-019-46633-7. [PDF]
Tait L, Stothart G, Coulthard E, Brown JT, Kazanina N, Goodfellow M. (2019) Network substrates of cognitive impairment in Alzheimer's Disease, Clin Neurophysiol, volume 130, no. 9, pages 1581-1595, DOI:10.1016/j.clinph.2019.05.027. [PDF]
Tilston TW, Brown RD, Wateridge MJ, Arms-Williams B, Walker JJ, Sun Y, Wells T. (2019) A Novel Automated System Yields Reproducible Temporal Feeding Patterns in Laboratory Rodents, J Nutr, volume 149, no. 9, pages 1674-1684, DOI:10.1093/jn/nxz116. [PDF]
Słowiński P, Sheybani L, Michel CM, Richardson MP, Quairiaux C, Terry JR, Goodfellow M. (2019) Background EEG connectivity captures the time-course of epileptogenesis in a mouse model of epilepsy, eneuro, pages ENEURO.0059-ENEU19.2019, DOI:10.1523/ENEURO.0059-19.2019. [PDF]
Ashwin P, von der Heydt AS. (2019) Extreme Sensitivity and Climate Tipping Points, Journal of Statistical Physics, volume 179, no. 5-6, pages 1531-1552, DOI:10.1007/s10955-019-02425-x.
Junges L, Lopes MA, Terry JR, Goodfellow M. (2019) The role that choice of model plays in predictions for epilepsy surgery, Sci Rep, volume 9, no. 1, DOI:10.1038/s41598-019-43871-7. [PDF]
Lopes MA, Goodfellow M, Terry JR. (2019) A Model-Based Assessment of the Seizure Onset Zone Predictive Power to Inform the Epileptogenic Zone, Frontiers in Computational Neuroscience, volume 13, DOI:10.3389/fncom.2019.00025. [PDF]
Sanders ND, Everson RM, Fieldsend JE, Rahat AAM. (2019) A Bayesian Approach for the Robust Optimisation of Expensive-To-Evaluate Functions. [PDF]
Alyahya K, Akman O, Fieldsend JE. (2019) Landscape Analysis Under Measurement Error, Genetic and Evolutionary Computation Conference Companion (GECCO), Prague, Czech Republic, 13th - 17th Jul 2019, Genetic and Evolutionary Computation Conference Companion (GECCO ’19 Companion), pages 1415-1418, DOI:10.1145/3319619.3326858.
Fieldsend JE, Alyahya K. (2019) Visualising the Landscape of Multi-Objective Problems using Local Optima Networks, Genetic and Evolutionary Computation Conference (GECCO), Prague, Czech Republic, 13th - 17th Jul 2019, Genetic and Evolutionary Computation Conference Companion (GECCO ’19 Companion),, pages 1421-1429, DOI:10.1145/3319619.3326838.
Prague JK, Voliotis M, Clarke S, Comninos AN, Abbara A, Jayasena CN, Roberts RE, Yang L, Veldhuis JD, Tsaneva-Atanasova K. (2019) Determining the relationship between hot flushes and LH pulses in menopausal women using mathematical modelling, The Journal of Clinical Endocrinology & Metabolism, DOI:10.1210/jc.2018-02797.
Fieldsend JE. (2019) Efficient Real-Time Hypervolume Estimation with Monotonically Reducing Error, Genetic and Evolutionary Computation Conference (GECCO ’19), Prague, 13th - 17th Jul 2019, DOI:10.1145/3321707.3321730.
Fieldsend JE, Chugh T, Allmendinger R, Miettinen K. (2019) A Feature Rich Distance-Based Many-Objective Visualisable Test Problem Generator, Genetic and Evolutionary Computation Conference (GECCO ’19), Prague, 13th - 17th Jul 2019, DOI:10.1145/3321707.3321727.
Ashwin P, Bick C, Poignard C. (2019) State-dependent effective interactions in oscillator networks through coupling functions with dead zones, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, volume 377, no. 2160, pages 20190042-20190042, DOI:10.1098/rsta.2019.0042.
Mohammadi H, Challenor P, Goodfellow M, Williamson D. (2019) Emulating computer models with step-discontinuous outputs using Gaussian processes. [PDF]
Ceni A, Ashwin P, Livi L. (2019) Interpreting Recurrent Neural Networks Behaviour via Excitable Network Attractors, Cognitive Computation, volume 12, no. 2, pages 330-356, DOI:10.1007/s12559-019-09634-2.
Pinion J. (2019) Concordant spatio-temporal patterns of brain activation in zebrafish exposed to compounds with similar pharmacodynamics or with similar seizurogenic potential.
Quinn C. (2019) Delayed effects and critical transitions in climate models.
Belmont M, Al-Ani M, Challenor P, Christmas J, Wilson P. (2019) Obtaining the distribution of quiescent periods directly from the power spectral densities of Sea waves, Applied Ocean Research, volume 85, pages 65-72, DOI:10.1016/j.apor.2019.01.027.
Bick C, Goodfellow M, Laing CR, Martens EA. (2019) Understanding the dynamics of biological and neural oscillator networks through exact mean-field reductions: a review, Journal of Mathematical Neuroscience, 10(1):9, 2020. [PDF]
Smug D. (2019) Critical Transitions in financial models: Bifurcation- and noise-induced phenomena.
Ferrat L. (2019) Machine Learning and Statistical Analysis of Complex Mathematical Models: An Application to Epilepsy.
Curran JA, Buhl E, Tsaneva-Atanasova K, Hodge JJL. (2019) Age-dependent changes in clock neuron structural plasticity and excitability are associated with a decrease in circadian output behaviour and sleep, Neurobiology of Aging, DOI:10.1016/j.neurobiolaging.2019.01.025. [PDF]
Liang S, Kinghorn AB, Voliotis M, Prague JK, Veldhuis JD, Tsaneva-Atanasova K, McArdle CA, Li RHW, Cass AEG, Dhillo WS. (2019) Measuring luteinising hormone pulsatility with a robotic aptamer-enabled electrochemical reader, Nature Communications, volume 10, no. 1, DOI:10.1038/s41467-019-08799-6. [PDF]
Zavala E, Wedgwood KCA, Voliotis M, Tabak J, Spiga F, Lightman SL, Tsaneva-Atanasova K. (2019) Mathematical Modelling of Endocrine Systems, volume 30, pages 244-257, article no. 4, DOI:10.1016/j.tem.2019.01.008.
Fieldsend JE, Doherty K, Alyahya K, Akman O. (2019) Robust Optimisation using Voronoi-Based Archive Sampling, UQOP: Uncertainty Quantification & Optimization, Sorbonne University, Paris, France, 18th - 20th Mar 2019.
Williams CA, Wedgwood KCA, Mohammadi H, Prouse K, Tomlinson OW, Tsaneva-Atanasova K. (2019) Cardiopulmonary responses to maximal aerobic exercise in patients with cystic fibrosis, PLoS ONE, volume 14, article no. 2, DOI:10.1371/journal.pone.0211219.
Baker E, Challenor P, Eames M. (2019) Diagnostics for Stochastic Gaussian Process Emulators. [PDF]
Alkhayuon H, Ashwin P, Jackson LC, Quinn C, Wood RA. (2019) Basin bifurcations, oscillatory instability and rate-induced thresholds for Atlantic meridional overturning circulation in a global oceanic box model, Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, volume 475, no. 2225, DOI:10.1098/rspa.2019.0051.
Słowiński P, Baldemir H, Wood G, Alizadehkhaiyat O, Coyles G, Vine S, Williams G, Tsaneva-Atanasova K, Wilson M. (2019) Gaze training supports self-organization of movement coordination in children with developmental coordination disorder, Scientific Reports, volume 9, no. 1, pages 1712-1712, DOI:10.1038/s41598-018-38204-z. [PDF]
Kimpton L, Challenor P, Williamson D. (2019) Modelling Numerical Systems with Two Distinct Labelled Output Classes. [PDF]
Pérez-Cervera A, Ashwin P, Huguet G, Seara TM, Rankin J. (2019) The uncoupling limit of identical Hopf bifurcations with an application to perceptual bistability. [PDF]
Williams CAP, Wedgwood K, Mohammadi H, Prouse K, Tomlinson O, Tsaneva K. (2019) Cardiopulmonary Responses to Maximal Aerobic Exercise in Patients with Cystic Fibrosis (data set), DOI:10.24378/exe.1105.
Yanchuk S, Ruschel S, Sieber J, Wolfrum M. (2019) Temporal dissipative solitons in time-delay feedback systems, Physical Review Letters. [PDF]
Challen R, Denny J, Pitt M, Gompels L, Edwards T, Tsaneva-Atanasova K. (2019) Artificial intelligence, bias and clinical safety, BMJ Quality & Safety, DOI:10.1136/bmjqs-2018-008370. [PDF]
Tokuda IT, Akman OE, Locke JCW. (2019) Reducing the complexity of mathematical models for the plant circadian clock by distributed delays, Journal of Theoretical Biology, volume 463, pages 155-166, DOI:10.1016/j.jtbi.2018.12.014.
Tran GT, Oliver KIC, Holden PB, Edwards NR, Sóbester A, Challenor P. (2019) Multi-level emulation of complex climate model responses to boundary forcing data, Climate Dynamics, volume 52, no. 3-4, pages 1505-1531, DOI:10.1007/s00382-018-4205-4.
Mohammadi H, Challenor P, Goodfellow M. (2019) Emulating dynamic non-linear simulators using Gaussian processes, Computational Statistics and Data Analysis, volume 139, pages 178-196, DOI:10.1016/j.csda.2019.05.006.

2018

Alobaid H, Voliotis M, Tsaneva-Atanasova K, McArdle C. (2018) Measuring of information transfer via gonadotropin-releasing hormone receptors (GnRHR) shows a remarkable loss of information through signalling, Endocrine Abstracts, DOI:10.1530/endoabs.59.p130.
Ashwin P, Creaser J, Tsaneva-Atanasova K. (2018) Sequential escapes: onset of slow domino regime via a saddle connection.
Quinn C, Sieber J, von der Heydt A. (2018) Effects of periodic forcing on a Paleoclimate delay model.
Laiou P, Avramidis E, Lopes MA, Akman OE, Goodfellow M. (2018) Estimating Seizure Freedom Post-Surgery Using Mathematical Modelling, EPILEPSIA, volume 59, pages S204-S204. [PDF]
Lopes M, Richardson M, Abela E, Rummel C, Schindler K, Goodfellow M, Terry J. (2018) A Computer Model Biomarker of Focal and Generalized Epilepsies from Resting State EEG, EPILEPSIA, volume 59, pages S58-S58. [PDF]
Voliotis M, Garner KL, Alobaid H, Tsaneva-Atanasova K, McArdle CA. (2018) Exploring Dynamics and Noise in Gonadotropin-Releasing Hormone (GnRH) Signaling, United States, 405-429, DOI:10.1007/978-1-4939-8618-7_19. [PDF]
Wedgwood KCA, Tabak J, Tsaneva-Atanasova K. (2018) Modelling Ion Channels, Mathematical Modelling in Plant Biology, Springer International Publishing, 37-52, DOI:10.1007/978-3-319-99070-5_3.
Thoubaan M, Ashwin P. (2018) Existence and stability of chimera states in a minimal system of phase oscillators, Chaos: An Interdisciplinary Journal of Nonlinear Science, DOI:10.1063/1.5044750.
Mellucci C, Menon PP, Edwards C, Challenor P. (2018) Oceanic Feature Boundary Mapping with an Autonomous Underwater Glider, Proceedings of the American Control Conference, volume 2018-June, pages 5338-5343, DOI:10.23919/ACC.2018.8431011.
Ramlugun GS, Thomas B, Biktashev VN, Fraser DP, LeGrice IJ, Smaill BH, Zhao J, Biktasheva IV. (2018) Dynamics of cardiac re-entry in micro-CT and serial histological sections based models of mammalian hearts. [PDF]
Ceni A, Ashwin P, Livi L. (2018) Interpreting RNN behaviour via excitable network attractors, CoRR, volume abs/1807.10478.
Rahat AAM, Wang C, Everson RM, Fieldsend JE. (2018) Data-driven multi-objective optimisation of coal-fired boiler combustion systems, Applied Energy, volume 229, pages 446-458, DOI:10.1016/j.apenergy.2018.07.101.
Slowinski P, Al-Ramadhani S, Tsaneva-Atanasova KT. (2018) Relaxation oscillations and canards in the Jirsa–Kelso excitator model: global flow perspective, The European Physical Journal Special Topics, volume 227(5), pages 591-601, DOI:10.1140/epjst/e2018-00129-2. [PDF]
Tsaneva-Atanasova K, Diaz-Zuccarini V. (2018) Editorial: Mathematics for Healthcare as Part of Computational Medicine, Frontiers in Physiology, volume 9, pages 985-985, DOI:10.3389/fphys.2018.00985. [PDF]
Daniels S, Rahat AAM, Everson R, Tabor G, Fieldsend J. (2018) A Suite of Computationally Expensive Shape Optimisation Problems Using Computational Fluid Dynamics, Parallel Problem Solving from Nature – PPSN XV, Coimbra, Portugal, 8th - 12th Sep 2018, DOI:10.1007/978-3-319-99259-4_24.
Ditlevsen PD, Ashwin P. (2018) Complex climate response to astronomical forcing: The middle-pleistocene transition in glacial cycles and changes in frequency locking, Frontiers in Physics, volume 6, no. JUN, DOI:10.3389/fphy.2018.00062.
Smith P, Arias R, Sonti S, Odgerel Z, Santa-Maria I, McCabe BD, Tsaneva-Atanasova K, Louis ED, Hodge JJL, Clark LN. (2018) A Drosophila Model of Essential Tremor, Scientific Reports, volume 8, no. 1, article no. 7664, DOI:10.1038/s41598-018-25949-w.
Müller M, Schindler K, Goodfellow M, Pollo C, Rummel C, Steimer A. (2018) Evaluating resective surgery targets in epilepsy patients: A comparison of quantitative EEG methods, Journal of Neuroscience Methods, volume 305, pages 54-66, DOI:10.1016/j.jneumeth.2018.04.021.
Smug D, Sornette D, Ashwin PB. (2018) A Generalized 2D-Dynamical Mean-Field Ising Model with a Rich Set of Bifurcations (Inspired and Applied to Financial Crises), International Journal of Bifurcation and Chaos, volume 28, pages 1830010-1830010, DOI:10.1142/S0218127418300100.
Ashwin P, David Camp C, von der Heydt AS. (2018) Chaotic and non-chaotic response to quasiperiodic forcing: limits to predictability of ice ages paced by Milankovitch forcing, Dynamics and Statistics of the Climate System, volume 3, no. 1, DOI:10.1093/climsys/dzy002.
Doherty K, Alyahya K, Fieldsend JE, Akman O. (2018) Voronoi-Based Archive Sampling for Robust Optimisation, Genetic and Evolutionary Computation Conference, Kyoto, 15th - 19th Jul 2018, GECCO '18 Companion: Genetic and Evolutionary Computation Conference Companion, DOI:10.1145/3205651.3205768.
Alyahya K, Doherty K, Akman O, Fieldsend JE. (2018) Robust Multi-Modal Optimisation, Genetic and Evolutionary Computation Conference, Kyoto, 15th - 19th Jul 2018, GECCO '18 Companion: Genetic and Evolutionary Computation Conference Companion, DOI:10.1145/3205651.3208258.
Fieldsend JE. (2018) Computationally efficient local optima network construction, GECCO 2018 Companion - Proceedings of the 2018 Genetic and Evolutionary Computation Conference Companion, pages 1481-1488, DOI:10.1145/3205651.3208263.
Tait L, Wedgwood K, Tsaneva-Atanasova K, Brown JT, Goodfellow M. (2018) Control of clustered action potential firing in a mathematical model of entorhinal cortex stellate cells, J Theor Biol, volume 449, pages 23-34, DOI:10.1016/j.jtbi.2018.04.013. [PDF]
Ashwin P, Creaser J, Tsaneva-Atanasova K. (2018) Sequential escapes: onset of slow domino regime via a saddle connection, European Physical Journal: Special Topics, volume 227, no. 10-11, pages 1091-1100, DOI:10.1140/epjst/e2018-800038-5.
Smug D, Ashwin P, Sornette D. (2018) Predicting financial market crashes using ghost singularities, PLoS One, volume 13, no. 3, DOI:10.1371/journal.pone.0195265. [PDF]
Ferrat LA, Goodfellow M, Terry JR. (2018) Classifying dynamic transitions in high dimensional neural mass models: A random forest approach, PLoS Computational Biology, volume 14, no. 3, DOI:10.1371/journal.pcbi.1006009.
Lopes MA, Richardson MP, Abela E, Rummel C, Schindler K, Goodfellow M, Terry JR. (2018) Elevated Ictal Brain Network Ictogenicity Enables Prediction of Optimal Seizure Control, Frontiers in Neurology, volume 9, DOI:10.3389/fneur.2018.00098. [PDF]
Ashwin P, Postlethwaite C. (2018) Sensitive Finite-State Computations Using a Distributed Network With a Noisy Network Attractor, IEEE Transactions on Neural Networks and Learning Systems, volume 29, no. 12, pages 5847-5858, DOI:10.1109/TNNLS.2018.2813404.
Stirrat LI, Walker JJ, Stryjakowska K, Jones N, Homer NZM, Andrew R, Norman JE, Lightman SL, Reynolds RM. (2018) Pulsatility of glucocorticoid hormones in pregnancy: Changes with gestation and obesity, Clin Endocrinol (Oxf), volume 88, no. 4, pages 592-600, DOI:10.1111/cen.13548. [PDF]
Sieber J, Marschler C, Starke J. (2018) Convergence of equation-free methods in the case of finite time scale separation with application to deterministic and stochastic systems, SIAM Journal on Applied Dynamical Systems, volume 17, no. 4, pages 2574-2614, DOI:10.1137/17M1126084.
Quinn C, Sieber J, Heydt ASVD, Lenton TM. (2018) The Mid-Pleistocene Transition induced by delayed feedback and bistability, Dynamics and Statistics of the Climate System.
Alkhayuon HM, Ashwin P. (2018) Rate-induced tipping from periodic attractors: Partial tipping and connecting orbits, Chaos, volume 28, no. 3, DOI:10.1063/1.5000418.
Weinberger O, Ashwin P. (2018) From coupled networks of systems to networks of states in phase space, Discrete and Continuous Dynamical Systems - Series B, volume 23, no. 5, pages 2021-2041, DOI:10.3934/dcdsb.2018193.
Creaser J, Tsaneva-Atanasova K, Ashwin P. (2018) Sequential noise-induced escapes for oscillatory network dynamics, SIAM Journal on Applied Dynamical Systems, volume 17(1), pages 500-525, DOI:10.1137/17M1126412.
Sadreev II, Chen MZQ, Umezawa Y, Biktashev VN, Kemper C, Salakhieva DV, Welsh GI, Kotov NV. (2018) The competitive nature of signal transducer and activator of transcription complex formation drives phenotype switching of T cells, Immunology, volume 153, no. 4, pages 488-501, DOI:10.1111/imm.12851. [PDF]
Kusev P, Schaik P, Tsaneva-Atanasova K, Juliusson A, Chater N. (2018) Adaptive Anchoring Model: How Static and Dynamic Presentations of Time Series Influence Judgments and Predictions, Cognitive science, volume 42, pages 77-102, article no. 1.

2017

Ashwin P, Creaser J, Tsaneva-Atanasova K. (2017) Fast and slow domino regimes in transient network dynamics.
Creaser J, Tsaneva-Atanasova K, Ashwin P. (2017) Sequential noise-induced escapes for oscillatory network dynamics.
Thompson JMT, Hutchinson JW, Sieber J. (2017) Probing shells against buckling: a non-destructive technique for laboratory testing.
Quinn C, Sieber J, von der Heydt AS, Lenton TM. (2017) The Mid-Pleistocene Transition induced by delayed feedback and bistability.
Ritchie P, Karabacak O, Sieber J. (2017) Inverse-square law between time and amplitude for crossing tipping thresholds.
Sieber J. (2017) Local bifurcations in differential equations with state-dependent delay.
Sieber J, Marschler C, Starke J. (2017) Convergence of equation-free methods in the case of finite time scale separation with application to deterministic and stochastic systems.
Newton AJH, Seidenstein AH, McDougal RA, Pérez-Cervera A, Huguet G, M-Seara T, Haimerl C, Angulo-Garcia D, Torcini A, Cossart R. (2017) 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3, BMC Neuroscience, volume 18, no. S1, article no. 60, DOI:10.1186/s12868-017-0372-1.
Challenor PG. (2017) IOP Physics Communicators Group - IOP Gallery representative.
Luzyanina T, Sieber J, Engelborghs K, Samaey G, Roose D. (2017) Numerical bifurcation analysis of mathematical models with time delays with the package DDE-BIFTOOL, Mathematical Biology and Bioinformatics, volume 12, no. 2, pages 496-520, DOI:10.17537/2017.12.496.
Tokmakian R, Challenor P. (2017) Towards the validation of a traceable climate model hierarchies, Dynamics and Statistics of the Climate System, volume 2, no. 1, DOI:10.1093/climsys/dzx003.
Thompson JMT, Hutchinson JW, Sieber J. (2017) Probing Shells Against Buckling: A Nondestructive Technique for Laboratory Testing, International Journal of Bifurcation and Chaos, volume 27, no. 14, DOI:10.1142/S0218127417300488.
Aptekarev AI, Afendikov AL, Ataullakhanov FI, Balabaev NK, Biktashev VN, Biktasheva IV, Borisyuk RM, Vvedenskaya ND, Dagkesamanskii RD, Zarkhin YG. (2017) To the memory of Emmanuil El'evich Shnol, RUSSIAN MATHEMATICAL SURVEYS, volume 72, no. 1, pages 185-198, DOI:10.1070/RM9751. [PDF]
Rankin J, Chavane F. (2017) Neural field model to reconcile structure with function in primary visual cortex, PLOS Computational Biology, volume 13, no. 10, pages e1005821-e1005821, DOI:10.1371/journal.pcbi.1005821.
Ashwin P, Creaser J, Tsaneva-Atanasova K. (2017) Fast and slow domino regimes in transient network dynamics, Physical Review E, volume 96, no. 5, DOI:10.1103/PhysRevE.96.052309.
Sieber J. (2017) Local bifurcations in differential equations with state-dependent delay, Chaos, volume 27, no. 11, DOI:10.1063/1.5011747.
Liu Y, Fieldsend JE, Min G. (2017) A framework of fog computing: Architecture, challenges, and optimization, IEEE Access, volume 5, pages 25445-25454, DOI:10.1109/ACCESS.2017.2766923.
Pratap A, Garner KL, Voliotis M, Tsaneva-Atanasova K, McArdle CA. (2017) Authors response to communication about mathematical modeling of gonadotropin-releasing hormone signaling, Molecular and Cellular Endocrinology, DOI:10.1016/j.mce.2017.09.035. [PDF]
Cohen L, Khoramshahi M, Salesse RN, Bortolon C, Slowinski PM, Zhai C, Tsaneva-Atanasova K, di Bernardo M, Capdevielle D, Marin L. (2017) Influence of facial feedback and mind perception during a cooperative human-robot task in schizophrenia, Scientific Reports, volume 7(1), pages 15023-15023, DOI:10.1038/s41598-017-14773-3.
Marcotte CD, Grigoriev RO. (2017) Dynamical mechanism of atrial fibrillation: A topological approach, Chaos, volume 27, no. 9, DOI:10.1063/1.5003259. [PDF]
Medathati NVK, Rankin J, Meso AI, Kornprobst P, Masson GS. (2017) Recurrent network dynamics reconciles visual motion segmentation and integration, Scientific Reports, volume 7, no. 1, article no. 11270, DOI:10.1038/s41598-017-11373-z.
Rahi SJ, Larsch J, Pecani K, Katsov AY, Mansouri N, Tsaneva-Atanasova K, Sontag ED, Cross FR. (2017) Oscillatory stimuli differentiate adapting circuit topologies, Nature Methods, volume 14(10), pages 1010-1016, DOI:10.1038/nmeth.4408. [PDF]
Mellucci C, Menon PP, Edwards C, Challenor P. (2017) Experimental validation of boundary tracking using the suboptimal sliding mode algorithm, Proceedings of the American Control Conference, pages 4878-4883, DOI:10.23919/ACC.2017.7963710.
Lopes MA, Richardson MP, Abela E, Rummel C, Schindler K, Goodfellow M, Terry JR. (2017) An optimal strategy for epilepsy surgery: Disruption of the rich-club?, PLoS Comput Biol, volume 13, no. 8, DOI:10.1371/journal.pcbi.1005637. [PDF]
Coste A, Slowiński P, Tsaneva-Atanasova K, Bardy BG, Marin L. (2017) Mapping Individual Postural Signatures, Psychology Press, Studies in Perception and Action XIV: Nineteenth International Conference on Perception and Action, pages 105-109.
Daniels SJ, Rahat A, Tabor G, Fieldsend J, Everson R. (2017) Automatic shape optimisation of the turbine-99 draft tube, 12th OpenFOAM Workshop, University Of Exeter, Devon, Uk, 24th - 27th Jul 2017.
Voliotis M, Garner KL, Alobaid H, Tsaneva-Atanasova K, McArdle CA. (2017) Gonadotropin-releasing hormone signaling: An information theoretic approach, Molecular and Cellular Endocrinology, volume 463, pages 106-115, DOI:10.1016/j.mce.2017.07.028. [PDF]
Li H-H, Rankin J, Rinzel J, Carrasco M, Heeger DJ. (2017) Attention model of binocular rivalry, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, volume 114, no. 30, pages E6192-E6201, DOI:10.1073/pnas.1620475114. [PDF]
Spiga F, Zavala E, Walker JJ, Zhao Z, Terry JR, Lightman SL. (2017) Dynamic responses of the adrenal steroidogenic regulatory network, Proc Natl Acad Sci U S A, volume 114, no. 31, pages E6466-E6474, DOI:10.1073/pnas.1703779114. [PDF]
Creaser JL, Krauskopf B, Osinga HM. (2017) Finding first foliation tangencies in the Lorenz system, SIAM Journal on Applied Dynamical Systems, volume 16, no. 4, pages 2127-2164, DOI:10.1137/17M1112716.
Rankin J, Osinga HM. (2017) Parameter-dependent behaviour of periodic channels in a locus of boundary crisis, EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS, volume 226, no. 9, pages 1739-1750, DOI:10.1140/epjst/e2017-70048-x. [PDF]
Y. Shen, P. Tino, K. Tsaneva-Atanasova. (2017) Classification of sparsely and irregularly sampled time series: A learning in model space approach, 2017 International Joint Conference on Neural Networks (IJCNN), Anchorage, Ak, Usa, 14th - 19th May 2017, DOI:10.1109/IJCNN.2017.7966321.
Lin C, White RR, Sparkes I, Ashwin PB. (2017) Modelling endoplasmic reticulum network maintenance in a plant cell, Biophysical Journal, volume 113, pages 214-222, DOI:10.1016/j.bpj.2017.05.046.
Voliotis M, Garner KL, Alobaid H, Tsaneva-Atanasova K, McArdle CA. (2017) Mutual information estimation - MATLAB code.
Doherty K, Alyahya K, Akman OE, Fieldsend JE. (2017) Optimisation and Landscape Analysis of Computational Biology Models: A Case Study, Genetic and Evolutionary Computation Conference, Companion Proceedings, Berlin, Germany, 15th - 19th Jul 2017, DOI:10.1145/3067695.3084609.
Granados AA, Crane MM, Montano-Gutierrez LF, Tanaka RJ, Voliotis M, Swain PS. (2017) Distributing tasks via multiple input pathways increases cellular survival in stress, Elife, volume 6, DOI:10.7554/eLife.21415. [PDF]
Betterton RT, Broad LM, Tsaneva-Atanasova K, Mellor JR. (2017) Acetylcholine modulates gamma frequency oscillations in the hippocampus by activation of muscarinic M1 receptors, European Journal of Neuroscience, DOI:10.1111/ejn.13582. [PDF]
Ritchie P, Sieber J. (2017) Probability of noise- and rate-induced tipping, Physical Review E, volume 95, no. 5, article no. 052209, DOI:10.1103/physreve.95.052209.
Alyahya K, Doherty K, Fieldsend JE, Akman OE. (2017) On the Exploitation of Search History and Accumulative Sampling in Robust Optimisation, Genetic and Evolutionary Computation Conference (GECCO), Companion Publication, Berlin, 15th - 19th Jul 2017, DOI:10.1145/3067695.3076060.
Fieldsend JE. (2017) University Staff Teaching Allocation: Formulating and Optimising a Many-Objective Problem, Genetic and Evolutionary Computation Conference (GECCO), Berlin, 15th - 19th Jul 2017, DOI:10.1145/3071178.3071230.
Rahat AAM, Everson RM, Fieldsend JE. (2017) Alternative Infill Strategies for Expensive Multi-Objective Optimisation, Genetic and Evolutionary Computation Conference (GECCO), Berlin, 15th - 19th Jul 2017, DOI:10.1145/3071178.3071276.
Bagheri S, Konen W, Allmendinger R, Branke J, Deb K, Fieldsend JE, Quagliarella D, Sindhya K. (2017) Constraint Handling in Efficient Global Optimization, Genetic and Evolutionary Computation Conference (GECCO), Berlin, 15th - 19th Jul 2017, DOI:10.1145/3071178.3071278.
Voliotis M, Liverpool TB. (2017) Statistical mechanics of tuned cell signalling: Sensitive collective response by synthetic biological circuits, Journal of Statistical Mechanics: Theory and Experiment, volume 2017, no. 3, DOI:10.1088/1742-5468/aa58ad.
Rankin J, Osborn Popp PO, Rinzel J. (2017) Stimulus pauses and perturbations differentially delay or promote the segregation of auditory objects: psychoacoustics and modeling, Frontiers in Neuroscience, volume 11, pages 198-198, DOI:10.3389/fnins.2017.00198.
Goodfellow M, Rummel C, Abela E, Richardson MP, Schindler K, Terry JR. (2017) Computer models to inform epilepsy surgery strategies: Prediction of postoperative outcome, Brain, volume 140, no. 5, DOI:10.1093/brain/awx067.
Stary T, Biktashev VN. (2017) Fast-slow asymptotics for a Markov chain model of fast sodium current, Chaos, 27: 093937, 2017. [PDF]
Bezekci B, Biktashev VN. (2017) Fast-slow asymptotic for semi-analytical ignition criteria in FitzHugh-Nagumo system, Chaos, volume 27, no. 9, DOI:10.1063/1.4999472.
Shen Y, Tino P, Tsaneva-Atanasova K. (2017) Classification framework for partially observed dynamical systems, Physical Review E, volume 95, no. 4, pages 043303-043303-21, DOI:10.1103/PhysRevE.95.043303. [PDF]
Romanò N, McClafferty H, Walker JJ, Le Tissier P, Shipston MJ. (2017) Heterogeneity of Calcium Responses to Secretagogues in Corticotrophs From Male Rats, Endocrinology, volume 158, no. 6, pages 1849-1858, DOI:10.1210/en.2017-00107. [PDF]
Garner KL, Voliotis M, Alobaid H, Perrett RM, Pham T, Tsaneva-Atanasova K, McArdle CA. (2017) Information Transfer via Gonadotropin-Releasing Hormone Receptors to ERK and NFAT: Sensing GnRH and Sensing Dynamics, Journal of the Endocrine Society, volume 1, pages 260-277, article no. 4, DOI:10.1210/js.2016-1096.
Avramidis E, Akman OE. (2017) Optimisation of an exemplar oculomotor model using multi-objective genetic algorithms executed on a GPU-CPU combination, BMC Systems Biology, volume 11, article no. 40, DOI:10.1186/s12918-017-0416-2.
Garner KL, Tsaneva-Atanasova K, McArdle CA. (2017) GnRH Action, Endocrinology of the Testis and Male Reproduction, Springer International Publishing, 1-36, DOI:10.1007/978-3-319-29456-8_2-1. [PDF]
Jedynak M, Pons AJ, Garcia-Ojalvo J, Goodfellow M. (2017) Temporally correlated fluctuations drive epileptiform dynamics, NeuroImage, volume 146, pages 188-196, DOI:10.1016/j.neuroimage.2016.11.034.
Słowiński P, Alderisio F, Zhai C, Shen Y, Tino P, Bortolon C, Capdevielle D, Cohen L, Khoramshahi M, Billard A. (2017) Unravelling socio-motor biomarkers in schizophrenia, npj Schizophrenia, volume 3, no. 1, article no. 8, DOI:10.1038/s41537-016-0009-x.
Pratap A, Garner KL, Voliotis M, Tsaneva-Atanasova K, McArdle CA. (2017) Mathematical modeling of gonadotropin-releasing hormone signaling, Mol Cell Endocrinol, volume 449, pages 42-55, DOI:10.1016/j.mce.2016.08.022. [PDF]
Oza HB, Pandey R, Roper D, Al-Nuaimi Y, Spurgeon SK, Goodfellow M. (2017) Modelling and finite-time stability analysis of psoriasis pathogenesis, International Journal of Control, volume 90, pages 1664-1677, article no. 8, DOI:10.1080/00207179.2016.1217566. [PDF]
Dierckx H, Biktasheva IV, Verschelde H, Panfilov AV, Biktashev VN. (2017) Filament Tension and Phase Locking of Meandering Scroll Waves, Physical Review Letters, volume 119, no. 25, DOI:10.1103/PhysRevLett.119.258101.
Hornung D, Biktashev VN, Otani NF, Shajahan TK, Baig T, Berg S, Han S, Krinsky VI, Luther S. (2017) Mechanisms of vortices termination in the cardiac muscle, Royal Society Open Science, volume 4, no. 3, DOI:10.1098/rsos.170024.
Antonioletti M, Biktashev VN, Jackson A, Kharche SR, Stary T, Biktasheva IV. (2017) BeatBox—HPC simulation environment for biophysically and anatomically realistic cardiac electrophysiology, PLOS ONE, volume 12, no. 5, pages e0172292-e0172292, DOI:10.1371/journal.pone.0172292.
von der Heydt AS, Ashwin P. (2017) State dependence of climate sensitivity: attractor constraints and palaeoclimate regimes, Dynamics and Statistics of the Climate System, volume 1, no. 1, DOI:10.1093/climsys/dzx001.
Ashwin P, Perryman C, Wieczorek S. (2017) Parameter shifts for nonautonomous systems in low dimension: Bifurcation- and rate-induced tipping, Nonlinearity, volume 30, no. 6, pages 2185-2210, DOI:10.1088/1361-6544/aa675b.

2016

Stirrat L, Walker J, Norman J, Lightman S, Walker B, Reynolds R. (2016) Role of cortisol ultradian pulsatility in human pregnancy: a case-control study, The Lancet, volume 387, DOI:10.1016/s0140-6736(16)00480-3.
Ritchie P, Sieber J. (2016) Probability of noise- and rate-induced tipping.
Ritchie P, Sieber J. (2016) Early-warning indicators in the dynamic regime.
Marcotte CD, Grigoriev RO. (2016) Adjoint eigenfunctions of temporally recurrent single-spiral solutions in a simple model of atrial fibrillation. [PDF]
von der Heydt AS, Dijkstra HA, van de Wal RSW, Caballero R, Crucifix M, Foster GL, Huber M, Köhler P, Rohling E, Valdes PJ. (2016) Lessons on Climate Sensitivity From Past Climate Changes, Current Climate Change Reports, volume 2, no. 4, pages 148-158, DOI:10.1007/s40641-016-0049-3.
Daniels SJ, Rahat A, Tabor G, Fieldsend J, Everson R. (2016) Shape optimisation using Computational Fluid Dynamics and Evolutionary Algorithms, 11th OpenFOAM Workshop, Vila Flor Cultural Centre, Guimarães, Portugal, 26th - 30th Jun 2016.
Mohammadi H, Le Riche R, Touboul E. (2016) A detailed analysis of kernel parameters in Gaussian process-based optimization.
Mohammadi H, Le Riche R. (2016) Small ensemble of kriging models for optimization.
Mohammadi H, Le Riche R, Durrande N, Touboul E, Bay X. (2016) An analytic comparison of regularization methods for Gaussian processes.
Mohammadi H. (2016) Kriging-based black-box global optimization: analysis and new algorithms.
Mohammadi H, Le Riche R, Bay X, Touboul E. (2016) An analysis of covariance parameters in Gaussian process-based optimization, 16th International Conference on Operational Research, KOI, Osijek, Croatia, 18th - 20th Sep 2016.
Steinacher A, Bates DG, Akman OE, Soyer OS. (2016) Nonlinear Dynamics in Gene Regulation Promote Robustness and Evolvability of Gene Expression Levels, PLOS ONE, volume 11, no. 4, pages e0153295-e0153295, DOI:10.1371/journal.pone.0153295.
Montefusco F, Akman OE, Soyer OS, Bates DG. (2016) Ultrasensitive Negative Feedback Control: A Natural Approach for the Design of Synthetic Controllers, PLOS ONE, volume 11, no. 8, pages e0161605-e0161605, DOI:10.1371/journal.pone.0161605.
Meso AI, Rankin J, Faugeras O, Kornprobst P, Masson GS. (2016) The relative contribution of noise and adaptation to competition during tri-stable motion perception, Journal of Vision, volume 16, no. 15, pages 6-6, DOI:10.1167/16.15.6.
Mellucci C, Menon PP, Edwards C, Challenor P. (2016) Predictive oceanic features tracking with formations of autonomous vehicles, 2016 IEEE 55th Conference on Decision and Control, CDC 2016, pages 6446-6451, DOI:10.1109/CDC.2016.7799261.
Wedgwood KCA, Richardson SJ, Morgan NG, Tsaneva-Atanasova K. (2016) Spatiotemporal dynamics of insulitis in human type 1 diabetes, Frontiers in Physiology, volume 7, article no. DEC, DOI:10.3389/fphys.2016.00633.
Bezekci B, Biktashev VN. (2016) Strength-Duration Relationship in an Excitable Medium. [PDF]
McNeall D, Williams J, Booth B, Betts R, Challenor P, Wiltshire A, Sexton D. (2016) The impact of structural error on parameter constraint in a climate model, Earth System Dynamics, volume 7, no. 4, pages 917-935, DOI:10.5194/esd-7-917-2016.
Mellucci C, Menon PP, Edwards C, Challenor P. (2016) Source seeking using a single autonomous vehicle, Proceedings of the American Control Conference, volume 2016-July, pages 6441-6446, DOI:10.1109/ACC.2016.7526683.
Ritchie P, Sieber J. (2016) Early-warning indicators for rate-induced tipping, Chaos, volume 26, no. 9, DOI:10.1063/1.4963012.
Jedynak M, Pons AJ, Garcia-Ojalvo J, Goodfellow M. (2016) Identification of epileptogenic rhythms in a mesoscopic neuronal model, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), volume 9886 LNCS.
Phillips NE, Manning CS, Pettini T, Biga V, Marinopoulou E, Stanley P, Boyd J, Bagnall J, Paszek P, Spiller DG. (2016) Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation, eLife, volume 5, DOI:10.7554/elife.16118.
Walker D, Fieldsend J, Everson R. (2016) Visualisation Methods in Genetic and Evolutionary Computation (VizGEC 2016) chairs' welcome & organization, GECCO 2016 Companion - Proceedings of the 2016 Genetic and Evolutionary Computation Conference, DOI:10.1145/2908961.2931743.
Clare MA, Talling PJ, Challenor PG, Hunt JE. (2016) Tempo and triggering of large submarine landslides: Statistical analysis for hazard assessment, Submarine Mass Movements and Their Consequences, 7th International Symposium, pages 509-517, DOI:10.1007/978-3-319-20979-1_51.
Rahat A, Everson R, Fieldsend J, Jin Y, Wang H. (2016) Surrogate-assisted evolutionary optimisation (SAEOpt'16) chairs' welcome & organization, GECCO 2016 Companion - Proceedings of the 2016 Genetic and Evolutionary Computation Conference, DOI:10.1145/2908961.2931710.
Zhai C, Alderisio F, Słowiński P, Tsaneva-Atanasova K, di Bernardo M. (2016) Design of a Virtual Player for Joint Improvisation with Humans in the Mirror Game, PLoS ONE, volume 11, no. 4, pages e0154361-e0154361, DOI:10.1371/journal.pone.0154361. [PDF]
Stothart G, Petkov G, Kazanina N, Goodfellow M, Tait L, Brown J. (2016) Graph-theoretical measures provide translational markers of large-scale brain network disruption in human dementia patients and animal models of dementia, International Journal of Psychophysiology, volume 108, pages 71-71, DOI:10.1016/j.ijpsycho.2016.07.232.
Clare MA, Talling PJ, Challenor PG, Hunt JE. (2016) Tempo and Triggering of Large Submarine Landslides: Statistical Analysis for Hazard Assessment, SUBMARINE MASS MOVEMENTS AND THEIR CONSEQUENCES, volume 41, pages 509-517, DOI:10.1007/978-3-319-20979-1_51. [PDF]
Movassagh M, Alomran N, Mudvari P, Dede M, Dede C, Kowsari K, Restrepo P, Cauley E, Bahl S, Li M. (2016) RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing data, Nucleic Acids Research, DOI:10.1093/nar/gkw757. [PDF]
Rahat AAM, Everson RM, Fieldsend JE. (2016) Evolutionary Multi-Path Routing for Network Lifetime and Robustness in Wireless Sensor Networks, Ad Hoc Networks, DOI:10.1016/j.adhoc.2016.08.005.
Słowiński P, Tsaneva-Atanasova K, Krauskopf B. (2016) Effects of time-delay in a model of intra- and inter-personal motor coordination, The European Physical Journal Special Topics, volume 225, no. 13, pages 2591-2600, DOI:10.1140/epjst/e2015-50327-6. [PDF]
Cizmeci D, Dempster EL, Champion OL, Wagley S, Akman OE, Prior JL, Soyer OS, Mill J, Titball RW. (2016) Mapping epigenetic changes to the host cell genome induced by Burkholderia pseudomallei reveals pathogen-specific and pathogen-generic signatures of infection, Scientific Reports, volume 6, DOI:10.1038/srep30861.
Schindler K, Rummel C, Andrzejak RG, Goodfellow M, Zubler F, Abela E, Wiest R, Pollo C, Steimer A, Gast H. (2016) Ictal time-irreversible intracranial EEG signals as markers of the epileptogenic zone, Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology, volume 127, no. 9, pages 3051-3058, DOI:10.1016/j.clinph.2016.07.001.
Fieldsend JE. (2016) Dynamic Visualisation of Many-Objective Populations, OR58, Portsmouth, 6th - 8th Sep 2016, OR58 Annual Conference - Keynote Papers and Extended Abstracts, pages 57-67.
Schmidt H, Woldman W, Goodfellow M, Chowdhury FA, Koutroumanidis M, Jewell S, Richardson MP, Terry JR. (2016) A computational biomarker of idiopathic generalized epilepsy from resting state EEG, Epilepsia, volume 57, no. 10, pages e200-e204, DOI:10.1111/epi.13481.
Ashwin P, Rodrigues A. (2016) Hopf normal form with SN symmetry and reduction to systems of nonlinearly coupled phase oscillators, Physica D: Nonlinear Phenomena, volume 325, pages 14-24, DOI:10.1016/j.physd.2016.02.009.
Goodfellow M, Rummel C, Abela E, Richardson MP, Schindler K, Terry JR. (2016) Estimation of brain network ictogenicity predicts outcome from epilepsy surgery, Scientific Reports, volume 6, DOI:10.1038/srep29215.
Lin C, Schuster M, Guimaraes SC, Ashwin P, Schrader M, Metz J, Hacker C, Gurr SJ, Steinberg G. (2016) Active diffusion and microtubule-based transport oppose myosin forces to position organelles in cells, NATURE COMMUNICATIONS, volume 7, article no. ARTN 11814, DOI:10.1038/ncomms11814. [PDF]
Avitabile D, Słowiński P, Bardy B, Tsaneva-Atanasova K. (2016) Beyond in-phase and anti-phase coordination in a model of joint action, Biological Cybernetics, volume 110(2), pages 201-216, DOI:10.1007/s00422-016-0691-9. [PDF]
Bick C, Ashwin P, Rodrigues A. (2016) Chaos in generically coupled phase oscillator networks with nonpairwise interactions, Chaos: An Interdisciplinary Journal of Nonlinear Science, volume 26, no. 9, pages 094814-094814, DOI:10.1063/1.4958928.
Griffith T, Tsaneva-Atanasova K, Mellor JR. (2016) Control of Ca2+ Influx and Calmodulin Activation by SK-Channels in Dendritic Spines, PLoS Comput Biol, volume 12, no. 5, pages e1004949-e1004949, DOI:10.1371/journal.pcbi.1004949. [PDF]
Mina P, Tsaneva-Atanasova K, Bernardo MD. (2016) Entrainment and Control of Bacterial Populations: An in Silico Study over a Spatially Extended Agent Based Model, ACS Synthetic Biology, volume 5, no. 7, pages 639-653, DOI:10.1021/acssynbio.5b00243.
Atherton LA, Prince LY, Tsaneva-Atanasova K. (2016) Bifurcation analysis of a two-compartment hippocampal pyramidal cell model, Journal of Computational Neuroscience, pages 1-16, DOI:10.1007/s10827-016-0606-8. [PDF]
Biktashev VN, Tsyganov MA. (2016) Quasisolitons in self-diffusive excitable systems, or Why asymmetric diffusivity obeys the Second Law, Scientific Reports, volume 6, DOI:10.1038/srep30879.
Fieldsend JE. (2016) Enabling Dominance Resistance in Visualisable Distance-Based Many-Objective Problems, GECCO, Denver, Colorado, Usa, 20th - 24th Jul 2016, GECCO'16 Companion, pages 1429-1436.
Giang T. Tran, Kevin I. C. Oliver, András Sóbester, David J. J. Toal, Philip B. Holden, Robert Marsh, Challenor PG, Neil R. Edwards. (2016) Building a traceable climate model hierarchy with multi-level emulators, Advances in Statistical Climatology, Meteorology and Oceanography, DOI:10.5194/ascmo-2-17-2016.
Ashwin P, Bick C, Burylko O. (2016) Identical Phase Oscillator Networks: Bifurcations, Symmetry and Reversibility for Generalized Coupling, Frontiers in Applied Mathematics and Statistics, volume 2, DOI:10.3389/fams.2016.00007.
Mirams GR, Pathmanathan P, Gray RA, Challenor P, Clayton RH. (2016) Uncertainty and variability in computational and mathematical models of cardiac physiology, J Physiol, volume 594, no. 23, pages 6833-6847, DOI:10.1113/JP271671. [PDF]
Słowiński P, Zhai C, Alderisio F, Salesse R, Gueugnon M, Marin L, Bardy BG, di Bernardo M, Tsaneva-Atanasova K. (2016) Dynamic similarity promotes interpersonal coordination in joint action, Journal of The Royal Society Interface, volume 13, no. 116, DOI:10.1098/rsif.2015.1093. [PDF]
Terry JR, Walker JJ, Spiga F, Lightman SL. (2016) Dynamics of the HPA axis: A systems modelling approach, Computational Neuroendocrinology, Wiley, 252-283.
Sieber J. (2016) Generic stabilizability for time-delayed feedback control (Supplementary material), DOI:10.6084/m9.figshare.2993812.v8. [PDF]
Ashwin P, Postlethwaite C. (2016) Quantifying noisy attractors: From heteroclinic to excitable networks, SIAM Journal on Applied Dynamical Systems, volume 15, no. 4, pages 1989-2016, DOI:10.1137/16M1061813.
Booth CA, Witton J, Nowacki J, Tsaneva-Atanasova K, Jones MW, Randall AD, Brown JT. (2016) Altered Intrinsic Pyramidal Neuron Properties and Pathway-Specific Synaptic Dysfunction Underlie Aberrant Hippocampal Network Function in a Mouse Model of Tauopathy, J Neurosci, volume 36, no. 2, pages 350-363, DOI:10.1523/JNEUROSCI.2151-15.2016. [PDF]
Khalil I, Atkinson PM, Challenor P. (2016) Looking back and looking forwards: Historical and future trends in sea surface temperature (SST) in the Indo-Pacific region from 1982 to 2100, INTERNATIONAL JOURNAL OF APPLIED EARTH OBSERVATION AND GEOINFORMATION, volume 45, pages 14-26, DOI:10.1016/j.jag.2015.10.005. [PDF]
Garner KL, Perrett RM, Voliotis M, Bowsher C, Pope GR, Pham T, Caunt CJ, Tsaneva-Atanasova K, McArdle CA. (2016) Information Transfer in Gonadotropin-releasing Hormone (GnRH) Signaling, Journal of Biological Chemistry, volume 291, no. 5, pages 2246-2259, DOI:10.1074/jbc.m115.686964.
Thompson JMT, Sieber J. (2016) Shock-Sensitivity in Shell-Like Structures: With Simulations of Spherical Shell Buckling, International Journal of Bifurcation and Chaos, volume 26, no. 2, DOI:10.1142/S0218127416300032.
Roslan UAM, Ashwin P. (2016) Local and global stability indices for a riddled basin attractor of a piecewise linear map, Dynamical Systems, volume 31, no. 3, pages 375-392, DOI:10.1080/14689367.2016.1148662.
Booth CA, Ridler T, Murray TK, Ward MA, de Groot E, Goodfellow M, Phillips KG, Randall AD, Brown JT. (2016) Electrical and Network Neuronal Properties Are Preferentially Disrupted in Dorsal, But Not Ventral, Medial Entorhinal Cortex in a Mouse Model of Tauopathy, J Neurosci, volume 36, no. 2, pages 312-324, DOI:10.1523/JNEUROSCI.2845-14.2016. [PDF]
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Panaggio MJ, Abrams DM, Ashwin P, Laing CR. (2016) Chimera states in networks of phase oscillators: The case of two small populations, Physical Review E, volume 93, no. 1, DOI:10.1103/PhysRevE.93.012218.
Ashwin P, Coombes S, Nicks R. (2016) Mathematical Frameworks for Oscillatory Network Dynamics in Neuroscience, Journal of Mathematical Neuroscience, volume 6, no. 1, pages 1-92, DOI:10.1186/s13408-015-0033-6.
Ashwin P, Postlethwaite C. (2016) Designing Heteroclinic and Excitable Networks in Phase Space Using Two Populations of Coupled Cells, Journal of Nonlinear Science, volume 26, no. 2, pages 345-364, DOI:10.1007/s00332-015-9277-2.

Showing 355 publications from Symplectic.

Patents

Jarman D, Daniels S, Rahat A, Fieldsend J, Everson R, Tabor G. Separator for separating solids from a fluid, Patent Number: 10843105, US, 2020.

Showing 1 patents from Symplectic.