Publications | Mathematics | University of Exeter

EPSRC Centre for Predictive Modelling in Healthcare

EPSRC Centre for Predictive Modelling in Healthcare

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| 2019 | 2018 | 2017 | 2016 |

2019

Rankin J, Rinzel J. (2019) Computational models of auditory perception from feature extraction to stream segregation and behavior, Curr Opin Neurobiol, volume 58, pages 46-53, DOI:10.1016/j.conb.2019.06.009. [PDF]
Lopes MA, Perani S, Yaakub SN, Richardson MP, Goodfellow M, Terry JR. (2019) Revealing epilepsy type using a computational analysis of interictal EEG, Sci Rep, volume 9, no. 1, DOI:10.1038/s41598-019-46633-7. [PDF]
Tait L, Stothart G, Coulthard E, Brown JT, Kazanina N, Goodfellow M. (2019) Network substrates of cognitive impairment in Alzheimer's Disease, Clin Neurophysiol, volume 130, no. 9, pages 1581-1595, DOI:10.1016/j.clinph.2019.05.027. [PDF]
Słowiński P, Sheybani L, Michel CM, Richardson MP, Quairiaux C, Terry JR, Goodfellow M. (2019) Background EEG connectivity captures the time-course of epileptogenesis in a mouse model of epilepsy, eneuro, pages ENEURO.0059-ENEU19.2019, DOI:10.1523/ENEURO.0059-19.2019. [PDF]
Junges L, Lopes MA, Terry JR, Goodfellow M. (2019) The role that choice of model plays in predictions for epilepsy surgery, Sci Rep, volume 9, no. 1, DOI:10.1038/s41598-019-43871-7. [PDF]
Lopes M, Goodfellow M, Terry J. (2019) A Model-Based Assessment of the Seizure Onset Zone Predictive Power to Inform the Epileptogenic Zone, Frontiers in Computational Neuroscience, volume 13, DOI:10.3389/fncom.2019.00025. [PDF]
Alyahya K, Akman O, Fieldsend JE. (2019) Landscape Analysis Under Measurement Error, Genetic and Evolutionary Computation Conference Companion (GECCO), Prague, Czech Republic, 13th - 17th Jul 2019, Genetic and Evolutionary Computation Conference Companion (GECCO ’19 Companion), pages 1415-1418, DOI:10.1145/3319619.3326858. [PDF]
Fieldsend JE, Alyahya K. (2019) Visualising the Landscape of Multi-Objective Problems using Local Optima Networks, Genetic and Evolutionary Computation Conference (GECCO), Prague, Czech Republic, 13th - 17th Jul 2019, Genetic and Evolutionary Computation Conference Companion (GECCO ’19 Companion),, pages 1421-1429, DOI:10.1145/3319619.3326838. [PDF]
Woldman W, Cook MJ, Terry JR. (2019) Evolving dynamic networks: An underlying mechanism of drug resistance in epilepsy?, Epilepsy and Behavior, volume 94, pages 264-268, DOI:10.1016/j.yebeh.2019.03.003. [PDF]
Prague JK, Voliotis M, Clarke S, Comninos AN, Abbara A, Jayasena CN, Roberts RE, Yang L, Veldhuis JD, Tsaneva-Atanasova K. (2019) Determining the relationship between hot flushes and LH pulses in menopausal women using mathematical modelling, The Journal of Clinical Endocrinology & Metabolism, DOI:10.1210/jc.2018-02797. [PDF]
Fieldsend JE. (2019) Efficient Real-Time Hypervolume Estimation with Monotonically Reducing Error, Genetic and Evolutionary Computation Conference (GECCO ’19), Prague, 13th - 17th Jul 2019, DOI:10.1145/3321707.3321730. [PDF]
Fieldsend JE, Chugh T, Allmendinger R, Miettinen K. (2019) A Feature Rich Distance-Based Many-Objective Visualisable Test Problem Generator, Genetic and Evolutionary Computation Conference (GECCO ’19), Prague, 13th - 17th Jul 2019, DOI:10.1145/3321707.3321727. [PDF]
Mohammadi H, Challenor P, Goodfellow M, Williamson D. (2019) Emulating computer models with step-discontinuous outputs using Gaussian processes. [PDF]
Ceni A, Ashwin P, Livi L. (2019) Interpreting recurrent neural networks behaviour via excitable network attractors, Cognitive Computation, DOI:10.1007/s12559-019-09634-2. [PDF]
Pinion J. (2019) Concordant spatio-temporal patterns of brain activation in zebrafish exposed to compounds with similar pharmacodynamics or with similar seizurogenic potential. [PDF]
Quinn C. (2019) Delayed effects and critical transitions in climate models. [PDF]
Belmont M, Al-Ani M, Challenor P, Christmas J, Wilson P. (2019) Obtaining the distribution of quiescent periods directly from the power spectral densities of Sea waves, Applied Ocean Research, volume 85, pages 65-72, DOI:10.1016/j.apor.2019.01.027.
Smug D. (2019) Critical Transitions in financial models: Bifurcation- and noise-induced phenomena. [PDF]
Ferrat L. (2019) Machine Learning and Statistical Analysis of Complex Mathematical Models: An Application to Epilepsy. [PDF]
Curran JA, Buhl E, Tsaneva-Atanasova K, Hodge JJL. (2019) Age-dependent changes in clock neuron structural plasticity and excitability are associated with a decrease in circadian output behaviour and sleep, Neurobiology of Aging, DOI:10.1016/j.neurobiolaging.2019.01.025. [PDF]
Liang S, Kinghorn AB, Voliotis M, Prague JK, Veldhuis JD, Tsaneva-Atanasova K, McArdle CA, Li RHW, Cass AEG, Dhillo WS. (2019) Measuring luteinising hormone pulsatility with a robotic aptamer-enabled electrochemical reader, Nature Communications, volume 10, no. 1, DOI:10.1038/s41467-019-08799-6. [PDF]
Zavala E, Wedgwood KCA, Voliotis M, Tabak J, Spiga F, Lightman SL, Tsaneva-Atanasova K. (2019) Mathematical Modelling of Endocrine Systems, Trends in Endocrinology & Metabolism, DOI:10.1016/j.tem.2019.01.008. [PDF]
Fieldsend JE, Doherty K, Alyahya K, Akman O. (2019) Robust Optimisation using Voronoi-Based Archive Sampling, UQOP: Uncertainty Quantification & Optimization, Sorbonne University, Paris, France, 18th - 20th Mar 2019. [PDF]
Williams CA, Wedgwood KCA, Mohammadi H, Prouse K, Tomlinson OW, Tsaneva-Atanasova K. (2019) Cardiopulmonary responses to maximal aerobic exercise in patients with cystic fibrosis, PLOS ONE, volume 14, no. 2, pages e0211219-e0211219, DOI:10.1371/journal.pone.0211219. [PDF]
Alkhayuon H, Ashwin P, Jackson LC, Quinn C, Wood RA. (2019) Basin bifurcations, oscillatory instability and rate-induced thresholds for Atlantic meridional overturning circulation in a global oceanic box model, Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, volume 475, no. 2225, DOI:10.1098/rspa.2019.0051. [PDF]
Słowiński P, Baldemir H, Wood G, Alizadehkhaiyat O, Coyles G, Vine S, Williams G, Tsaneva-Atanasova K, Wilson M. (2019) Gaze training supports self-organization of movement coordination in children with developmental coordination disorder, Scientific Reports, volume 9, no. 1, pages 1712-1712, DOI:10.1038/s41598-018-38204-z. [PDF]
Challen R, Denny J, Pitt M, Gompels L, Edwards T, Tsaneva-Atanasova K. (2019) Artificial intelligence, bias and clinical safety, BMJ Quality & Safety, DOI:10.1136/bmjqs-2018-008370. [PDF]
Smithers HE, Terry JR, Brown JT, Randall AD. (2019) Sex-associated differences in excitability within the bed nucleus of the stria terminalis are reflective of cell-type, Neurobiology of Stress, volume 10, DOI:10.1016/j.ynstr.2018.100143.
Tokuda IT, Akman OE, Locke JCW. (2019) Reducing the complexity of mathematical models for the plant circadian clock by distributed delays, Journal of Theoretical Biology, volume 463, pages 155-166, DOI:10.1016/j.jtbi.2018.12.014. [PDF]
Tran GT, Oliver KIC, Holden PB, Edwards NR, Sóbester A, Challenor P. (2019) Multi-level emulation of complex climate model responses to boundary forcing data, Climate Dynamics, volume 52, no. 3-4, pages 1505-1531, DOI:10.1007/s00382-018-4205-4. [PDF]
Mohammadi H, Challenor P, Goodfellow M. (2019) Emulating dynamic non-linear simulators using Gaussian processes, Computational Statistics and Data Analysis, volume 139, pages 178-196, article no. arXiv:1802.07575, DOI:10.1016/j.csda.2019.05.006. [PDF]

2018

Laiou P, Avramidis E, Lopes MA, Akman OE, Goodfellow M. (2018) Estimating Seizure Freedom Post-Surgery Using Mathematical Modelling, EPILEPSIA, volume 59, pages S204-S204. [PDF]
Lopes M, Richardson M, Abela E, Rummel C, Schindler K, Goodfellow M, Terry J. (2018) A Computer Model Biomarker of Focal and Generalized Epilepsies from Resting State EEG, EPILEPSIA, volume 59, pages S58-S58. [PDF]
Voliotis M, Garner KL, Alobaid H, Tsaneva-Atanasova K, McArdle CA. (2018) Exploring Dynamics and Noise in Gonadotropin-Releasing Hormone (GnRH) Signaling, United States, 405-429, DOI:10.1007/978-1-4939-8618-7_19. [PDF]
Wedgwood KCA, Tabak J, Tsaneva-Atanasova K. (2018) Modelling Ion Channels, Mathematical Modelling in Plant Biology, Springer International Publishing, 37-52, DOI:10.1007/978-3-319-99070-5_3. [PDF]
Thoubaan M, Ashwin P. (2018) Existence and stability of chimera states in a minimal system of phase oscillators, Chaos: An Interdisciplinary Journal of Nonlinear Science, DOI:10.1063/1.5044750. [PDF]
Mellucci C, Menon PP, Edwards C, Challenor P. (2018) Oceanic Feature Boundary Mapping with an Autonomous Underwater Glider, Proceedings of the American Control Conference, volume 2018-June, pages 5338-5343, DOI:10.23919/ACC.2018.8431011.
Ceni A, Ashwin P, Livi L. (2018) Interpreting RNN behaviour via excitable network attractors, CoRR, volume abs/1807.10478.
Rahat AAM, Wang C, Everson RM, Fieldsend JE. (2018) Data-driven multi-objective optimisation of coal-fired boiler combustion systems, Applied Energy, volume 229, pages 446-458, DOI:10.1016/j.apenergy.2018.07.101. [PDF]
Slowinski P, Al-Ramadhani S, Tsaneva-Atanasova KT. (2018) Relaxation oscillations and canards in the Jirsa–Kelso excitator model: global flow perspective, The European Physical Journal Special Topics, volume 227(5), pages 591-601, DOI:10.1140/epjst/e2018-00129-2. [PDF]
Tsaneva-Atanasova K, Diaz-Zuccarini V. (2018) Editorial: Mathematics for Healthcare as Part of Computational Medicine, Frontiers in Physiology, volume 9, pages 985-985, DOI:10.3389/fphys.2018.00985. [PDF]
Daniels S, Rahat AAM, Everson R, Tabor G, Fieldsend J. (2018) A Suite of Computationally Expensive Shape Optimisation Problems Using Computational Fluid Dynamics, Parallel Problem Solving from Nature – PPSN XV, Coimbra, Portugal, 8th - 12th Sep 2018, DOI:10.1007/978-3-319-99259-4_24. [PDF]
Ditlevsen PD, Ashwin P. (2018) Complex climate response to astronomical forcing: The middle-pleistocene transition in glacial cycles and changes in frequency locking, Frontiers in Physics, volume 6, no. JUN, DOI:10.3389/fphy.2018.00062. [PDF]
Smith P, Arias R, Sonti S, Odgerel Z, Santa-Maria I, McCabe BD, Tsaneva-Atanasova K, Louis ED, Hodge JJL, Clark LN. (2018) A Drosophila Model of Essential Tremor, Scientific Reports, volume 8, no. 1, DOI:10.1038/s41598-018-25949-w.
Müller M, Schindler K, Goodfellow M, Pollo C, Rummel C, Steimer A. (2018) Evaluating resective surgery targets in epilepsy patients: A comparison of quantitative EEG methods, Journal of Neuroscience Methods, volume 305, pages 54-66, DOI:10.1016/j.jneumeth.2018.04.021. [PDF]
Smug D, Sornette D, Ashwin PB. (2018) A Generalized 2D-Dynamical Mean-Field Ising Model with a Rich Set of Bifurcations (Inspired and Applied to Financial Crises), International Journal of Bifurcation and Chaos, volume 28, pages 1830010-1830010, DOI:10.1142/S0218127418300100. [PDF]
Ashwin PETER, Goetz AREK, Peres P, Rodrigues ANA. (2018) Embeddings of interval exchange transformations into planar piecewise isometries, Ergodic Theory and Dynamical Systems, DOI:10.1017/etds.2018.112. [PDF]
Ashwin P, David Camp C, von der Heydt AS. (2018) Chaotic and non-chaotic response to quasiperiodic forcing: limits to predictability of ice ages paced by Milankovitch forcing, Dynamics and Statistics of the Climate System, volume 3, no. 1, DOI:10.1093/climsys/dzy002. [PDF]
Doherty K, Alyahya K, Fieldsend JE, Akman O. (2018) Voronoi-Based Archive Sampling for Robust Optimisation, Genetic and Evolutionary Computation Conference, Kyoto, 15th - 19th Jul 2018, GECCO '18 Companion: Genetic and Evolutionary Computation Conference Companion, DOI:10.1145/3205651.3205768. [PDF]
Alyahya K, Doherty K, Akman O, Fieldsend JE. (2018) Robust Multi-Modal Optimisation, Genetic and Evolutionary Computation Conference, Kyoto, 15th - 19th Jul 2018, GECCO '18 Companion: Genetic and Evolutionary Computation Conference Companion, DOI:10.1145/3205651.3208258. [PDF]
Fieldsend JE. (2018) Computationally efficient local optima network construction, GECCO 2018 Companion - Proceedings of the 2018 Genetic and Evolutionary Computation Conference Companion, pages 1481-1488, DOI:10.1145/3205651.3208263. [PDF]
Tait L, Wedgwood K, Tsaneva-Atanasova K, Brown JT, Goodfellow M. (2018) Control of clustered action potential firing in a mathematical model of entorhinal cortex stellate cells, J Theor Biol, volume 449, pages 23-34, DOI:10.1016/j.jtbi.2018.04.013. [PDF]
Ashwin P, Creaser J, Tsaneva-Atanasova K. (2018) Sequential escapes: onset of slow domino regime via a saddle connection, The European Physical Journal Special Topics, volume 227, pages 1091-1100, article no. 10, DOI:10.1140/epjst/e2018-800038-5. [PDF]
Smug D, Ashwin P, Sornette D. (2018) Predicting financial market crashes using ghost singularities, PLoS One, volume 13, no. 3, DOI:10.1371/journal.pone.0195265. [PDF]
Ferrat LA, Goodfellow M, Terry JR. (2018) Classifying dynamic transitions in high dimensional neural mass models: A random forest approach, PLoS Computational Biology, volume 14, no. 3, DOI:10.1371/journal.pcbi.1006009. [PDF]
Lopes M, Richardson MP, Abela E, Rummel C, Schindler K, Goodfellow M, Terry J. (2018) Elevated Ictal Brain Network Ictogenicity Enables Prediction of Optimal Seizure Control, Frontiers in Neurology, volume 9, DOI:10.3389/fneur.2018.00098. [PDF]
Ashwin P, Postlethwaite C. (2018) Sensitive Finite-State Computations Using a Distributed Network With a Noisy Network Attractor, IEEE Transactions on Neural Networks and Learning Systems, volume 29, no. 12, pages 5847-5858, DOI:10.1109/TNNLS.2018.2813404. [PDF]
Sieber J, Marschler C, Starke J. (2018) Convergence of equation-free methods in the case of finite time scale separation with application to deterministic and stochastic systems, SIAM Journal on Applied Dynamical Systems, volume 17, no. 4, pages 2574-2614, DOI:10.1137/17M1126084. [PDF]
Quinn C, Sieber J, Heydt ASVD, Lenton TM. (2018) The Mid-Pleistocene Transition induced by delayed feedback and bistability, Dynamics and Statistics of the Climate System. [PDF]
Pratap A, Garner KL, Voliotis M, Tsaneva-Atanasova K, McArdle CA. (2018) Authors response to communication about mathematical modeling of gonadotropin-releasing hormone signaling, Molecular and Cellular Endocrinology, volume 470, pages 36-37, DOI:10.1016/j.mce.2017.09.035. [PDF]
Alkhayuon HM, Ashwin P. (2018) Rate-induced tipping from periodic attractors: Partial tipping and connecting orbits, Chaos, volume 28, no. 3, DOI:10.1063/1.5000418. [PDF]
Weinberger O, Ashwin P. (2018) From coupled networks of systems to networks of states in phase space, Discrete and Continuous Dynamical Systems - Series B, volume 23, no. 5, pages 2021-2041, DOI:10.3934/dcdsb.2018193. [PDF]
Creaser J, Tsaneva-Atanasova, Ashwin P. (2018) Sequential noise-induced escapes for oscillatory network dynamics, SIAM Journal on Applied Dynamical Systems, volume 17(1), pages 500-525, DOI:10.1137/17M1126412. [PDF]
C. Zhai, F. Alderisio, P. Słowiński, K. Tsaneva-Atanasova, M. di Bernardo. (2018) Design and Validation of a Virtual Player for Studying Interpersonal Coordination in the Mirror Game, IEEE Transactions on Cybernetics, volume 48(3), pages 1018-1029, DOI:10.1109/TCYB.2017.2671456. [PDF]
Kusev P, Schaik P, Tsaneva-Atanasova K, Juliusson A, Chater N. (2018) Adaptive Anchoring Model: How Static and Dynamic Presentations of Time Series Influence Judgments and Predictions, Cognitive science, volume 42, pages 77-102, article no. 1. [PDF]

2017

Challenor PG. (2017) IOP Physics Communicators Group - IOP Gallery representative.
Terry JR. (2017) Beyond My Control.
Luzyanina T, Sieber J, Engelborghs K, Samaey G, Roose D. (2017) Numerical bifurcation analysis of mathematical models with time delays with the package DDE-BIFTOOL, Mathematical Biology and Bioinformatics, volume 12, no. 2, pages 496-520, DOI:10.17537/2017.12.496.
Tokmakian R, Challenor P. (2017) Towards the validation of a traceable climate model hierarchies, Dynamics and Statistics of the Climate System, volume 2, no. 1, DOI:10.1093/climsys/dzx003. [PDF]
Smithers HE, Terry JR, Brown JT, Randall AD. (2017) Aging-Associated Changes to Intrinsic Neuronal Excitability in the Bed Nucleus of the Stria Terminalis Is Cell Type-Dependent, FRONTIERS IN AGING NEUROSCIENCE, volume 9, article no. ARTN 424, DOI:10.3389/fnagi.2017.00424. [PDF]
Thompson JMT, Hutchinson JW, Sieber J. (2017) Probing Shells Against Buckling: A Nondestructive Technique for Laboratory Testing, International Journal of Bifurcation and Chaos, volume 27, no. 14, DOI:10.1142/S0218127417300488. [PDF]
Aptekarev AI, Afendikov AL, Ataullakhanov FI, Balabaev NK, Biktashev VN, Biktasheva IV, Borisyuk RM, Vvedenskaya ND, Dagkesamanskii RD, Zarkhin YG. (2017) To the memory of Emmanuil El'evich Shnol, RUSSIAN MATHEMATICAL SURVEYS, volume 72, no. 1, pages 185-198, DOI:10.1070/RM9751. [PDF]
Rankin J, Chavane F. (2017) Neural field model to reconcile structure with function in primary visual cortex, PLOS Computational Biology, volume 13, no. 10, pages e1005821-e1005821, DOI:10.1371/journal.pcbi.1005821. [PDF]
Ashwin P, Creaser J, Tsaneva-Atanasova K. (2017) Fast and slow domino regimes in transient network dynamics, Physical Review E, volume 96, no. 5, DOI:10.1103/PhysRevE.96.052309. [PDF]
Sieber J. (2017) Local bifurcations in differential equations with state-dependent delay, Chaos, volume 27, no. 11, DOI:10.1063/1.5011747. [PDF]
Liu Y, Fieldsend JE, Min G. (2017) A framework of fog computing: Architecture, challenges, and optimization, IEEE Access, volume 5, pages 25445-25454, DOI:10.1109/ACCESS.2017.2766923. [PDF]
Cohen L, Khoramshahi M, Salesse RN, Bortolon C, Slowinski PM, Zhai C, Tsaneva-Atanasova K, di Bernardo M, Capdevielle D, Marin L. (2017) Influence of facial feedback and mind perception during a cooperative human-robot task in schizophrenia, Scientific Reports, volume 7(1), pages 15023-15023, DOI:10.1038/s41598-017-14773-3. [PDF]
Marcotte CD, Grigoriev RO. (2017) Dynamical mechanism of atrial fibrillation: A topological approach, Chaos, volume 27, no. 9, DOI:10.1063/1.5003259. [PDF]
Medathati NVK, Rankin J, Meso AI, Kornprobst P, Masson GS. (2017) Recurrent network dynamics reconciles visual motion segmentation and integration, Scientific Reports, volume 7, no. 1, DOI:10.1038/s41598-017-11373-z. [PDF]
Rahi SJ, Larsch J, Pecani K, Katsov AY, Mansouri N, Tsaneva-Atanasova K, Sontag ED, Cross FR. (2017) Oscillatory stimuli differentiate adapting circuit topologies, Nature Methods, volume 14(10), pages 1010-1016, DOI:10.1038/nmeth.4408. [PDF]
Mellucci C, Menon PP, Edwards C, Challenor P. (2017) Experimental validation of boundary tracking using the suboptimal sliding mode algorithm, Proceedings of the American Control Conference, pages 4878-4883, DOI:10.23919/ACC.2017.7963710.
Lopes MA, Richardson MP, Abela E, Rummel C, Schindler K, Goodfellow M, Terry JR. (2017) An optimal strategy for epilepsy surgery: Disruption of the rich-club?, PLoS Comput Biol, volume 13, no. 8, DOI:10.1371/journal.pcbi.1005637. [PDF]
Coste A, Slowiński P, Tsaneva-Atanasova K, Bardy BG, Marin L. (2017) Mapping Individual Postural Signatures, Psychology Press, Studies in Perception and Action XIV: Nineteenth International Conference on Perception and Action, pages 105-109.
Daniels SJ, Rahat A, Tabor G, Fieldsend J, Everson R. (2017) Automatic shape optimisation of the turbine-99 draft tube, 12th OpenFOAM Workshop, University Of Exeter, Devon, Uk, 24th - 27th Jul 2017. [PDF]
Voliotis M, Garner KL, Alobaid H, Tsaneva-Atanasova K, McArdle CA. (2017) Gonadotropin-releasing hormone signaling: An information theoretic approach, Molecular and Cellular Endocrinology, volume 463, pages 106-115, DOI:10.1016/j.mce.2017.07.028. [PDF]
Green HD, Thomas G, Terry JR. (2017) Signal reconstruction of pulmonary vein recordings using a phenomenological mathematical model: Application to pulmonary vein isolation therapy, Frontiers in Physiology, volume 8, no. JUL, DOI:10.3389/fphys.2017.00496. [PDF]
Li H-H, Rankin J, Rinzel J, Carrasco M, Heeger DJ. (2017) Attention model of binocular rivalry, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, volume 114, no. 30, pages E6192-E6201, DOI:10.1073/pnas.1620475114. [PDF]
Spiga F, Zavala E, Walker JJ, Zhao Z, Terry JR, Lightman SL. (2017) Dynamic responses of the adrenal steroidogenic regulatory network, Proceedings of the National Academy of Sciences of the United States of America, volume 114, no. 31, pages E6466-E6474, DOI:10.1073/pnas.1703779114. [PDF]
Creaser JL, Krauskopf B, Osinga HM. (2017) Finding first foliation tangencies in the Lorenz system, SIAM Journal on Applied Dynamical Systems, volume 16, no. 4, pages 2127-2164, DOI:10.1137/17M1112716. [PDF]
Rankin J, Osinga HM. (2017) Parameter-dependent behaviour of periodic channels in a locus of boundary crisis, EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS, volume 226, no. 9, pages 1739-1750, DOI:10.1140/epjst/e2017-70048-x. [PDF]
Y. Shen, P. Tino, K. Tsaneva-Atanasova. (2017) Classification of sparsely and irregularly sampled time series: A learning in model space approach, 2017 International Joint Conference on Neural Networks (IJCNN), Anchorage, Ak, Usa, 14th - 19th May 2017, DOI:10.1109/IJCNN.2017.7966321.
Lin C, White RR, Sparkes I, Ashwin PB. (2017) Modelling endoplasmic reticulum network maintenance in a plant cell, Biophysical Journal, volume 113, pages 214-222, DOI:10.1016/j.bpj.2017.05.046. [PDF]
Voliotis M, Garner KL, Alobaid H, Tsaneva-Atanasova K, McArdle CA. (2017) Mutual information estimation - MATLAB code. [PDF]
Doherty K, Alyahya K, Akman OE, Fieldsend JE. (2017) Optimisation and Landscape Analysis of Computational Biology Models: A Case Study, Genetic and Evolutionary Computation Conference, Companion Proceedings, Berlin, Germany, 15th - 19th Jul 2017, DOI:10.1145/3067695.3084609. [PDF]
Betterton RT, Broad LM, Tsaneva-Atanasova K, Mellor JR. (2017) Acetylcholine modulates gamma frequency oscillations in the hippocampus by activation of muscarinic M1 receptors, European Journal of Neuroscience, DOI:10.1111/ejn.13582. [PDF]
Ritchie P, Sieber J. (2017) Probability of noise- and rate-induced tipping, Physical Review E, volume 95, no. 5, DOI:10.1103/PhysRevE.95.052209. [PDF]
Alyahya K, Doherty K, Fieldsend JE, Akman OE. (2017) On the Exploitation of Search History and Accumulative Sampling in Robust Optimisation, Genetic and Evolutionary Computation Conference (GECCO), Companion Publication, Berlin, 15th - 19th Jul 2017, DOI:10.1145/3067695.3076060. [PDF]
Fieldsend JE. (2017) University Staff Teaching Allocation: Formulating and Optimising a Many-Objective Problem, Genetic and Evolutionary Computation Conference (GECCO), Berlin, 15th - 19th Jul 2017, DOI:10.1145/3071178.3071230. [PDF]
Rahat AAM, Everson RM, Fieldsend JE. (2017) Alternative Infill Strategies for Expensive Multi-Objective Optimisation, Genetic and Evolutionary Computation Conference (GECCO), Berlin, 15th - 19th Jul 2017, DOI:10.1145/3071178.3071276. [PDF]
Bagheri S, Konen W, Allmendinger R, Branke J, Deb K, Fieldsend JE, Quagliarella D, Sindhya K. (2017) Constraint Handling in Efficient Global Optimization, Genetic and Evolutionary Computation Conference (GECCO), Berlin, 15th - 19th Jul 2017, DOI:10.1145/3071178.3071278. [PDF]
Voliotis M, Liverpool TB. (2017) Statistical mechanics of tuned cell signalling: Sensitive collective response by synthetic biological circuits, Journal of Statistical Mechanics: Theory and Experiment, volume 2017, no. 3, DOI:10.1088/1742-5468/aa58ad.
Rankin J, Osborn Popp PO, Rinzel J. (2017) Stimulus pauses and perturbations differentially delay or promote the segregation of auditory objects: psychoacoustics and modeling, Frontiers in Neuroscience, volume 11, pages 198-198, DOI:10.3389/fnins.2017.00198. [PDF]
Goodfellow M, Rummel C, Abela E, Richardson MP, Schindler K, Terry JR. (2017) Computer models to inform epilepsy surgery strategies: Prediction of postoperative outcome, Brain, volume 140, no. 5, DOI:10.1093/brain/awx067. [PDF]
Bezekci B, Biktashev VN. (2017) Fast-slow asymptotic for semi-analytical ignition criteria in FitzHugh-Nagumo system, Chaos, volume 27, no. 9, DOI:10.1063/1.4999472. [PDF]
Shen Y, Tino P, Tsaneva-Atanasova K. (2017) Classification framework for partially observed dynamical systems, Physical Review E, volume 95, no. 4, pages 043303-043303-21, DOI:10.1103/PhysRevE.95.043303. [PDF]
Garner KL, Voliotis M, Alobaid H, Perrett RM, Pham T, Tsaneva-Atanasova K, McArdle CA. (2017) Information Transfer via Gonadotropin-Releasing Hormone Receptors to ERK and NFAT: Sensing GnRH and Sensing Dynamics, Journal of the Endocrine Society, volume 1, pages 260-277, article no. 4, DOI:10.1210/js.2016-1096. [PDF]
Avramidis E, Akman OE. (2017) Optimisation of an exemplar oculomotor model using multi-objective genetic algorithms executed on a GPU-CPU combination, BMC Systems Biology, volume 11, article no. 40, DOI:10.1186/s12918-017-0416-2. [PDF]
Garner KL, Tsaneva-Atanasova K, McArdle CA. (2017) GnRH Action, Endocrinology of the Testis and Male Reproduction, Springer International Publishing, 1-36, DOI:10.1007/978-3-319-29456-8_2-1. [PDF]
Jedynak M, Pons AJ, Garcia-Ojalvo J, Goodfellow M. (2017) Temporally correlated fluctuations drive epileptiform dynamics, NeuroImage, volume 146, pages 188-196, DOI:10.1016/j.neuroimage.2016.11.034. [PDF]
Słowiński P, Alderisio F, Zhai C, Shen Y, Tino P, Bortolon C, Capdevielle D, Cohen L, Khoramshahi M, Billard A. (2017) Unravelling socio-motor biomarkers in schizophrenia, npj Schizophrenia, volume 3, no. 1, DOI:10.1038/s41537-016-0009-x. [PDF]
Pratap A, Garner KL, Voliotis M, Tsaneva-Atanasova K, McArdle CA. (2017) Mathematical modeling of gonadotropin-releasing hormone signaling, Molecular and Cellular Endocrinology, volume 449, pages 42-55, article no. C, DOI:10.1016/j.mce.2016.08.022. [PDF]
Dierckx H, Biktasheva IV, Verschelde H, Panfilov AV, Biktashev VN. (2017) Filament Tension and Phase Locking of Meandering Scroll Waves, Physical Review Letters, volume 119, no. 25, DOI:10.1103/PhysRevLett.119.258101. [PDF]
Hornung D, Biktashev VN, Otani NF, Shajahan TK, Baig T, Berg S, Han S, Krinsky VI, Luther S. (2017) Mechanisms of vortices termination in the cardiac muscle, Royal Society Open Science, volume 4, no. 3, DOI:10.1098/rsos.170024. [PDF]
Antonioletti M, Biktashev VN, Jackson A, Kharche SR, Stary T, Biktasheva IV. (2017) BeatBox—HPC simulation environment for biophysically and anatomically realistic cardiac electrophysiology, PLOS ONE, volume 12, no. 5, pages e0172292-e0172292, DOI:10.1371/journal.pone.0172292. [PDF]
von der Heydt AS, Ashwin P. (2017) State dependence of climate sensitivity: attractor constraints and palaeoclimate regimes, Dynamics and Statistics of the Climate System, volume 1, no. 1, DOI:10.1093/climsys/dzx001. [PDF]
Ashwin P, Perryman C, Wieczorek S. (2017) Parameter shifts for nonautonomous systems in low dimension: Bifurcation- and rate-induced tipping, Nonlinearity, volume 30, no. 6, pages 2185-2210, DOI:10.1088/1361-6544/aa675b. [PDF]

2016

von der Heydt AS, Dijkstra HA, van de Wal RSW, Caballero R, Crucifix M, Foster GL, Huber M, Köhler P, Rohling E, Valdes PJ. (2016) Lessons on Climate Sensitivity From Past Climate Changes, Current Climate Change Reports, volume 2, no. 4, pages 148-158, DOI:10.1007/s40641-016-0049-3.
Daniels SJ, Rahat A, Tabor G, Fieldsend J, Everson R. (2016) Shape optimisation using Computational Fluid Dynamics and Evolutionary Algorithms, 11th OpenFOAM Workshop, Vila Flor Cultural Centre, Guimarães, Portugal, 26th - 30th Jun 2016. [PDF]
Mohammadi H, Le Riche R, Touboul E. (2016) A detailed analysis of kernel parameters in Gaussian process-based optimization.
Mohammadi H, Le Riche R. (2016) Small ensemble of kriging models for optimization. [PDF]
Mohammadi H, Le Riche R, Durrande N, Touboul E, Bay X. (2016) An analytic comparison of regularization methods for Gaussian processes. [PDF]
Mohammadi H. (2016) Kriging-based black-box global optimization: analysis and new algorithms. [PDF]
Mohammadi H, Le Riche R, Bay X, Touboul E. (2016) An analysis of covariance parameters in Gaussian process-based optimization, 16th International Conference on Operational Research, KOI, Osijek, Croatia, 18th - 20th Sep 2016.
Steinacher A, Bates DG, Akman OE, Soyer OS. (2016) Nonlinear Dynamics in Gene Regulation Promote Robustness and Evolvability of Gene Expression Levels, PLOS ONE, volume 11, no. 4, pages e0153295-e0153295, DOI:10.1371/journal.pone.0153295. [PDF]
Montefusco F, Akman OE, Soyer OS, Bates DG. (2016) Ultrasensitive Negative Feedback Control: A Natural Approach for the Design of Synthetic Controllers, PLOS ONE, volume 11, no. 8, pages e0161605-e0161605, DOI:10.1371/journal.pone.0161605. [PDF]
Meso AI, Rankin J, Faugeras O, Kornprobst P, Masson GS. (2016) The relative contribution of noise and adaptation to competition during tri-stable motion perception, Journal of Vision, volume 16, no. 15, pages 6-6, DOI:10.1167/16.15.6. [PDF]
Mellucci C, Menon PP, Edwards C, Challenor P. (2016) Predictive oceanic features tracking with formations of autonomous vehicles, 2016 IEEE 55th Conference on Decision and Control, CDC 2016, pages 6446-6451, DOI:10.1109/CDC.2016.7799261.
Wedgwood KCA, Richardson SJ, Morgan NG, Tsaneva-Atanasova K. (2016) Spatiotemporal Dynamics of Insulitis in Human Type 1 Diabetes, Frontiers in Physiology, volume 7, pages 633-633, DOI:10.3389/fphys.2016.00633. [PDF]
McNeall D, Williams J, Booth B, Betts R, Challenor P, Wiltshire A, Sexton D. (2016) The impact of structural error on parameter constraint in a climate model, Earth System Dynamics, volume 7, no. 4, pages 917-935, DOI:10.5194/esd-7-917-2016. [PDF]
Mellucci C, Menon PP, Edwards C, Challenor P. (2016) Source seeking using a single autonomous vehicle, Proceedings of the American Control Conference, volume 2016-July, pages 6441-6446, DOI:10.1109/ACC.2016.7526683.
Ritchie P, Sieber J. (2016) Early-warning indicators for rate-induced tipping, Chaos, volume 26, no. 9, DOI:10.1063/1.4963012. [PDF]
Jedynak M, Pons AJ, Garcia-Ojalvo J, Goodfellow M. (2016) Identification of epileptogenic rhythms in a mesoscopic neuronal model, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), volume 9886 LNCS.
Phillips NE, Manning CS, Pettini T, Biga V, Marinopoulou E, Stanley P, Boyd J, Bagnall J, Paszek P, Spiller DG. (2016) Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation, eLife, volume 5, DOI:10.7554/elife.16118. [PDF]
Walker D, Fieldsend J, Everson R. (2016) Visualisation Methods in Genetic and Evolutionary Computation (VizGEC 2016) chairs' welcome & organization, GECCO 2016 Companion - Proceedings of the 2016 Genetic and Evolutionary Computation Conference, DOI:10.1145/2908961.2931743.
Clare MA, Talling PJ, Challenor PG, Hunt JE. (2016) Tempo and triggering of large submarine landslides: Statistical analysis for hazard assessment, Submarine Mass Movements and Their Consequences, 7th International Symposium, pages 509-517, DOI:10.1007/978-3-319-20979-1-51.
Rahat A, Everson R, Fieldsend J, Jin Y, Wang H. (2016) Surrogate-assisted evolutionary optimisation (SAEOpt'16) chairs' welcome & organization, GECCO 2016 Companion - Proceedings of the 2016 Genetic and Evolutionary Computation Conference, DOI:10.1145/2908961.2931710.
Junges L, Gavrielides A, Gallas JAC. (2016) Synchronization properties of two mutually delay-coupled semiconductor lasers, Journal of the Optical Society of America B, volume 33, no. 7, pages C65-C65, DOI:10.1364/JOSAB.33.000C65.
Junges L, Gallas JAC. (2016) Impact of delayed feedback of arbitrary duration in self-pulsations of a CO_2 laser, Journal of the Optical Society of America B, volume 33, no. 3, pages 373-373, DOI:10.1364/JOSAB.33.000373.
Zhai C, Alderisio F, Słowiński P, Tsaneva-Atanasova K, di Bernardo M. (2016) Design of a Virtual Player for Joint Improvisation with Humans in the Mirror Game, PLoS ONE, volume 11, no. 4, pages e0154361-e0154361, DOI:10.1371/journal.pone.0154361. [PDF]
Stothart G, Petkov G, Kazanina N, Goodfellow M, Tait L, Brown J. (2016) Graph-theoretical measures provide translational markers of large-scale brain network disruption in human dementia patients and animal models of dementia, International Journal of Psychophysiology, volume 108, pages 71-71, article no. C, DOI:10.1016/j.ijpsycho.2016.07.232.
Clare MA, Talling PJ, Challenor PG, Hunt JE. (2016) Tempo and Triggering of Large Submarine Landslides: Statistical Analysis for Hazard Assessment, SUBMARINE MASS MOVEMENTS AND THEIR CONSEQUENCES, volume 41, pages 509-517, DOI:10.1007/978-3-319-20979-1_51. [PDF]
Movassagh M, Alomran N, Mudvari P, Dede M, Dede C, Kowsari K, Restrepo P, Cauley E, Bahl S, Li M. (2016) RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing data, Nucleic Acids Research, DOI:10.1093/nar/gkw757. [PDF]
Rahat AAM, Everson RM, Fieldsend JE. (2016) Evolutionary Multi-Path Routing for Network Lifetime and Robustness in Wireless Sensor Networks, Ad Hoc Networks, DOI:10.1016/j.adhoc.2016.08.005. [PDF]
Słowiński P, Tsaneva-Atanasova K, Krauskopf B. (2016) Effects of time-delay in a model of intra- and inter-personal motor coordination, The European Physical Journal Special Topics, volume 225, no. 13, pages 2591-2600, DOI:10.1140/epjst/e2015-50327-6. [PDF]
Cizmeci D, Dempster EL, Champion OL, Wagley S, Akman OE, Prior JL, Soyer OS, Mill J, Titball RW. (2016) Mapping epigenetic changes to the host cell genome induced by Burkholderia pseudomallei reveals pathogen-specific and pathogen-generic signatures of infection, Scientific Reports, volume 6, DOI:10.1038/srep30861. [PDF]
Schindler K, Rummel C, Andrzejak RG, Goodfellow M, Zubler F, Abela E, Wiest R, Pollo C, Steimer A, Gast H. (2016) Ictal time-irreversible intracranial EEG signals as markers of the epileptogenic zone, Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology, volume 127, no. 9, pages 3051-3058, DOI:10.1016/j.clinph.2016.07.001. [PDF]
Fieldsend JE. (2016) Dynamic Visualisation of Many-Objective Populations, OR58, Portsmouth, 6th - 8th Sep 2016, OR58 Annual Conference - Keynote Papers and Extended Abstracts, pages 57-67. [PDF]
Schmidt H, Woldman W, Goodfellow M, Chowdhury FA, Koutroumanidis M, Jewell S, Richardson MP, Terry JR. (2016) A computational biomarker of idiopathic generalized epilepsy from resting state EEG, Epilepsia, DOI:10.1111/epi.13481. [PDF]
Ashwin P, Rodrigues A. (2016) Hopf normal form with SN symmetry and reduction to systems of nonlinearly coupled phase oscillators, Physica D: Nonlinear Phenomena, volume 325, pages 14-24, DOI:10.1016/j.physd.2016.02.009. [PDF]
Goodfellow M, Rummel C, Abela E, Richardson MP, Schindler K, Terry JR. (2016) Estimation of brain network ictogenicity predicts outcome from epilepsy surgery, Scientific Reports, volume 6, pages 29215-29215, DOI:10.1038/srep29215. [PDF]
Lin C, Schuster M, Guimaraes SC, Ashwin P, Schrader M, Metz J, Hacker C, Gurr SJ, Steinberg G. (2016) Active diffusion and microtubule-based transport oppose myosin forces to position organelles in cells, NATURE COMMUNICATIONS, volume 7, article no. ARTN 11814, DOI:10.1038/ncomms11814. [PDF]
Avitabile D, Słowiński P, Bardy B, Tsaneva-Atanasova K. (2016) Beyond in-phase and anti-phase coordination in a model of joint action, Biological Cybernetics, volume 110(2), pages 201-216, DOI:10.1007/s00422-016-0691-9. [PDF]
Bick C, Ashwin P, Rodrigues A. (2016) Chaos in generically coupled phase oscillator networks with nonpairwise interactions, Chaos: An Interdisciplinary Journal of Nonlinear Science, volume 26, no. 9, pages 094814-094814, DOI:10.1063/1.4958928. [PDF]
Griffith T, Tsaneva-Atanasova K, Mellor JR. (2016) Control of Ca2+ Influx and Calmodulin Activation by SK-Channels in Dendritic Spines, PLoS Comput Biol, volume 12, no. 5, pages e1004949-e1004949, DOI:10.1371/journal.pcbi.1004949. [PDF]
Mina P, Tsaneva-Atanasova K, Bernardo MD. (2016) Entrainment and Control of Bacterial Populations: An in Silico Study over a Spatially Extended Agent Based Model, ACS Synthetic Biology, volume 5, no. 7, pages 639-653, DOI:10.1021/acssynbio.5b00243. [PDF]
Atherton LA, Prince LY, Tsaneva-Atanasova K. (2016) Bifurcation analysis of a two-compartment hippocampal pyramidal cell model, Journal of Computational Neuroscience, pages 1-16, DOI:10.1007/s10827-016-0606-8. [PDF]
Biktashev VN, Tsyganov MA. (2016) Quasisolitons in self-diffusive excitable systems, or Why asymmetric diffusivity obeys the Second Law, Scientific Reports, volume 6, DOI:10.1038/srep30879. [PDF]
Fieldsend JE. (2016) Enabling Dominance Resistance in Visualisable Distance-Based Many-Objective Problems, GECCO, Denver, Colorado, Usa, 20th - 24th Jul 2016, GECCO'16 Companion, pages 1429-1436. [PDF]
Giang T. Tran, Kevin I. C. Oliver, András Sóbester, David J. J. Toal, Philip B. Holden, Robert Marsh, Challenor PG, Neil R. Edwards. (2016) Building a traceable climate model hierarchy with multi-level emulators, Advances in Statistical Climatology, Meteorology and Oceanography, DOI:10.5194/ascmo-2-17-2016. [PDF]
Ashwin P, Bick C, Burylko O. (2016) Identical Phase Oscillator Networks: Bifurcations, Symmetry and Reversibility for Generalized Coupling, Frontiers in Applied Mathematics and Statistics, volume 2, DOI:10.3389/fams.2016.00007. [PDF]
Słowiński P, Zhai C, Alderisio F, Salesse R, Gueugnon M, Marin L, Bardy BG, di Bernardo M, Tsaneva-Atanasova K. (2016) Dynamic similarity promotes interpersonal coordination in joint action, Journal of The Royal Society Interface, volume 13, no. 116, DOI:10.1098/rsif.2015.1093. [PDF]
Terry JR, Walker JJ, Spiga F, Lightman SL. (2016) Dynamics of the HPA axis: A systems modelling approach, Computational Neuroendocrinology, Wiley, 252-283.
Sieber J. (2016) Generic stabilizability for time-delayed feedback control (Supplementary material), DOI:10.6084/m9.figshare.2993812.v8. [PDF]
Ashwin P, Postlethwaite C. (2016) Quantifying noisy attractors: From heteroclinic to excitable networks, SIAM Journal on Applied Dynamical Systems, volume 15, no. 4, pages 1989-2016, DOI:10.1137/16M1061813. [PDF]
Booth CA, Witton J, Nowacki J, Tsaneva-Atanasova K, Jones MW, Randall AD, Brown JT. (2016) Altered Intrinsic Pyramidal Neuron Properties and Pathway-Specific Synaptic Dysfunction Underlie Aberrant Hippocampal Network Function in a Mouse Model of Tauopathy, J Neurosci, volume 36, no. 2, pages 350-363, DOI:10.1523/JNEUROSCI.2151-15.2016. [PDF]
Khalil I, Atkinson PM, Challenor P. (2016) Looking back and looking forwards: Historical and future trends in sea surface temperature (SST) in the Indo-Pacific region from 1982 to 2100, INTERNATIONAL JOURNAL OF APPLIED EARTH OBSERVATION AND GEOINFORMATION, volume 45, pages 14-26, DOI:10.1016/j.jag.2015.10.005. [PDF]
Thompson JMT, Sieber J. (2016) Shock-Sensitivity in Shell-Like Structures: With Simulations of Spherical Shell Buckling, International Journal of Bifurcation and Chaos, volume 26, no. 2, DOI:10.1142/S0218127416300032. [PDF]
Roslan UAM, Ashwin P. (2016) Local and global stability indices for a riddled basin attractor of a piecewise linear map, Dynamical Systems, volume 31, no. 3, pages 375-392, DOI:10.1080/14689367.2016.1148662. [PDF]
Booth CA, Ridler T, Murray TK, Ward MA, de Groot E, Goodfellow M, Phillips KG, Randall AD, Brown JT. (2016) Electrical and Network Neuronal Properties Are Preferentially Disrupted in Dorsal, But Not Ventral, Medial Entorhinal Cortex in a Mouse Model of Tauopathy, J Neurosci, volume 36, no. 2, pages 312-324, DOI:10.1523/JNEUROSCI.2845-14.2016. [PDF]
Bick C, Ashwin P. (2016) Chaotic weak chimeras and their persistence in coupled populations of phase oscillators, Nonlinearity, volume 29, no. 5, pages 1468-1486, DOI:10.1088/0951-7715/29/5/1468. [PDF]
Panaggio MJ, Abrams DM, Ashwin P, Laing CR. (2016) Chimera states in networks of phase oscillators: The case of two small populations, Physical Review E, volume 93, no. 1, DOI:10.1103/PhysRevE.93.012218. [PDF]
Ashwin P, Coombes S, Nicks R. (2016) Mathematical Frameworks for Oscillatory Network Dynamics in Neuroscience, Journal of Mathematical Neuroscience, volume 6, no. 1, pages 1-92, DOI:10.1186/s13408-015-0033-6. [PDF]
Ashwin P, Postlethwaite C. (2016) Designing Heteroclinic and Excitable Networks in Phase Space Using Two Populations of Coupled Cells, Journal of Nonlinear Science, volume 26, no. 2, pages 345-364, DOI:10.1007/s00332-015-9277-2. [PDF]

Showing 173 publications from Symplectic.